Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq279 125 1e-23 >seq279 Length=1218690 Score = 125 bits (138), Expect = 1e-23 Identities = 375/567 (66%), Gaps = 20/567 (4%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| ||||||||||| || | ||| |||||||||||| || | || || Sbjct 624581 ATCTGGGAGATGTACAAGAAAGCCGAAGCATCCTTCTGGACCGCCGAAGAAGTAGATCTA 624640 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGA-----AAAGT-TTTTCCTC 42413 | | |||| || |||||| || |||| ||||| || || ||| || Sbjct 624641 TCACAAGACAACCGCGATTGGGAG-AACAGTCT--CAACGACGGCGAACGTCACTTCATC 624697 Query 42414 AAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACC 42473 ||| || | || || |||||||| ||||| ||||| || || ||||| || || | Sbjct 624698 AAACACGTCCTCGCTTTCTTCGCTGCCTCCGACGGTATCGTTCTAGAGAATCTCGCATCT 624757 Query 42474 AGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCAGATAGC 42532 |||||||| || || || || |||||||| ||| |||||||| |||||||| || Sbjct 624758 CGGTTCATGTCCGATGTCCAAGTCTCGGAGGCGCG-TGCTTTCTACGGTTTCCAGATCGC 624816 Query 42533 CATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCC 42592 || ||||| | ||||||||| |||| || ||| | || |||||| || Sbjct 624817 GATTGAGAATATACACTCTGAGATGTATAGTCTTCTTCTCGATACTTACATCAAAGACAA 624876 Query 42593 CGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGC 42652 | ||| | || || ||| || || |||||||| || || || |||||| || Sbjct 624877 CAAAGAGAGAGACCATCTCTTCCGTGCGATTGAGACGATTCCTTGTGTCGCGAAGAAAGC 624936 Query 42653 GGACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCA-ACGTTCGGCGAGAGGCTGGTA 42710 | |||||| | || |||||||| | || | || || |||| || | | || Sbjct 624937 TCAGTGGGCGATGAAATGGATCGA-----CGGATCTCAGACCTTCGCTGAACGAATCGTT 624991 Query 42711 GCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTC 42770 || || | ||| || || ||||||||||| || |||| |||||||||||||| Sbjct 624992 GCTTTCGCTTGCGTTGAAGGTATCTTCTTCTCCGGAAGCTTCTGTTCCATCTTCTGGCTT 625051 Query 42771 AAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGA 42829 ||| | ||| || ||||| || | || ||||| |||||||| ||| | ||||| Sbjct 625052 AAGAAACGAGGACTC-ATGCCTGGGTTAACTTTCTCAAACGAACTGATCTCTCGAGACGA 625110 Query 42830 GGGGCTGCATAGGGACTTTGCCTGCCT 42856 || | || | ||||| || || || Sbjct 625111 AGGCTTACACTGCGACTTCGCGTGTCT 625137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944242570491360