Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq165 132 4e-26 seq180 129 5e-25 >seq165 Length=664114 Score = 132 bits (146), Expect = 4e-26 Identities = 196/276 (71%), Gaps = 10/276 (4%) Strand=Plus/Plus Query 20246 ACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAA 20305 || ||||| || || |||| | || || || |||||||||||| || || || | | Sbjct 156172 ACGTGAGCGAGAATGCAAGTAAGAAGAGAGTATGAGGCAATGTTAAATGGTACACCGAGA 156231 Query 20306 CCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAAT 20365 ||||| || | || | |||||||| ||||| ||||| || || | || |||||||| Sbjct 156232 CCCATATCGGCTGAGCGCTGATACATTTGACATGAAAGTTCTCCATTTGCAACATAAAAC 156291 Query 20366 TGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCA 20425 ||| |||| ||| || || ||||| ||||||||| || || | || ||||| || Sbjct 156292 TGAGCAAACATGTGGCATGGAGGAAGTGCCATCAACTTCAGATCAGGAGGATTCCAAGCT 156351 Query 20426 CACATAATGATTCTTCTATCGTGCGGATTATT-----TTTTATTAAATCCACAATGTACG 20480 |||| ||||||| |||||| | |||||||| |||| |||| | | || || Sbjct 156352 GACATTATGATTCGTCTATCATCAGGATTATTCTTGATTTTGTTAATTAC---ATCTA-- 156406 Query 20481 ACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCAT 20516 | | || ||||| || ||||| ||||| ||||||| Sbjct 156407 AGAGCTGATCAAATCCTTGGCCAGTATAATCAGCAT 156442 >seq180 Length=4117863 Score = 129 bits (142), Expect = 5e-25 Identities = 194/272 (71%), Gaps = 14/272 (5%) Strand=Plus/Plus Query 20250 GAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCA 20309 ||| | |||| |||| ||||| | || |||||||||||| || || || | ||||| Sbjct 3608122 GAGAATGCATGTAAG--AAGAGAGTATGA--GGCAATGTTAAATGGTACACCGAGACCCA 3608177 Query 20310 TGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGAC 20369 | || | || | |||||||| ||||| ||||| || || | || |||||||| ||| Sbjct 3608178 TATCGGCTGAGCGCTGATACATTTGACATGAAAGTTCTCCATTTGCAACATAAAACTGAG 3608237 Query 20370 ATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACA 20429 |||| ||| || || ||||| ||||||||| || || | |||||||| || ||| Sbjct 3608238 CAAACATGTGGCATGGAGGAAGTGCCATCAACTTCAGATCAGGAGGGTTCCAAGCTGACA 3608297 Query 20430 TAATGATTCTTCTATCGTGCGGATTATT-----TTTTATTAAATCCACAATGTACGACAA 20484 | ||||||| |||||| | ||||| || |||| |||| | | || || | | Sbjct 3608298 TTATGATTCGTCTATCATCAGGATTGTTCTTGATTTTGTTAATTAC---ATCTA--AGAG 3608352 Query 20485 TTGGTCAAACCCCTGGCCTGTATAGTCAGCAT 20516 || ||||| || ||||| ||||| ||||||| Sbjct 3608353 CTGATCAAATCCTTGGCCAGTATAATCAGCAT 3608384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441327636528240