Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq240 100 2e-16 seq280 95.1 1e-14 seq380 86.0 5e-12 seq82 86.0 5e-12 seq69 86.0 5e-12 seq75 82.4 6e-11 >seq240 Length=230833 Score = 100 bits (110), Expect = 2e-16 Identities = 167/241 (69%), Gaps = 18/241 (7%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||||||||| || ||||||| ||||||||| ||| ||||| |||||||| || || Sbjct 111267 ACCTCCTCTCAGACGGAGCACCAAATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGC 111208 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | || | |||| |||| || || ||||| || ||||| |||||||| ||| || Sbjct 111207 GAGTGTTCTCCCGTCTTCCAGCTGTTTCCCGGCGAAGATCAGCCGCTGCTGGTCCGGTGG 111148 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA 34079 | | || |||| | | | ||||||| ||||| | || | | || | Sbjct 111147 GATCCCTTCCTTGT-CTTGGATCTTTGCTT--------TCACATTGTCGATCGTGTCTGA 111097 Query 34080 T---TCGACC------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 | || ||| ||||| || || || |||| |||||||||||||| |||||||| Sbjct 111096 TGACTCTACCTCTAGGGTTATCGTCTTCCCCGTTAAGGTTTTCACAAAGATCTGCATTTT 111037 Query 34131 T 34131 | Sbjct 111036 T 111036 >seq280 Length=1980472 Score = 95.1 bits (104), Expect = 1e-14 Identities = 166/241 (69%), Gaps = 18/241 (7%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||||||||| || ||||||| |||||| || ||| ||||| |||||||| || || Sbjct 1633038 ACCTCCTCTCAGACGGAGCACCAAATGAAGAGTCGACTCTTTCTGGATGTTGTAGTCGGC 1632979 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | || | |||| |||| || || ||||| || ||||| |||||||| ||| ||| Sbjct 1632978 GAGTGTTCTCCCGTCTTCCAGCTGTTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGCGG 1632919 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA 34079 | | || |||| | | | || |||| ||||| | || | | || | Sbjct 1632918 GATCCCTTCCTTGT-CTTGGATCTTCGCTT--------TCACATTGTCGATCGTGTCTGA 1632868 Query 34080 T---TCGACC------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 | || ||| ||||| || || || |||| |||||||||||||| |||||||| Sbjct 1632867 TGACTCTACCTCTAGGGTTATCGTCTTCCCCGTTAAGGTTTTCACAAAGATCTGCATTTT 1632808 Query 34131 T 34131 | Sbjct 1632807 T 1632807 >seq380 Length=167695 Score = 86.0 bits (94), Expect = 5e-12 Identities = 84/106 (79%), Gaps = 2/106 (2%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCA-ATTGTCG 33968 || || ||||||||||||||||| |||||||| |||||||| || |||| | || || Sbjct 104826 AGACGGAGCACCAGATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCCGCCAGAGTG-CG 104884 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 |||| |||| ||||| ||||| ||||||| |||||||| ||| Sbjct 104885 GCCGTCTTCCAGCTGCTTCCCGGCGAATATCAACCGCTGCTGGTCC 104930 >seq82 Length=470516 Score = 86.0 bits (94), Expect = 5e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| |||||||| || ||||||| ||| || ||| ||| ||||| ||||||||||| || Sbjct 87645 ACCACCTCTCAGACGAAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAATCGGC 87704 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 ||| || | || || | ||||| |||||||| || || | |||||||||| Sbjct 87705 CAAGGTGCGACCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGATCC 87759 >seq69 Length=1777342 Score = 86.0 bits (94), Expect = 5e-12 Identities = 84/106 (79%), Gaps = 2/106 (2%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCA-ATTGTCG 33968 || || ||||||||||||||||| |||||||| |||||||| || |||| | || || Sbjct 335990 AGACGGAGCACCAGATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGGCCAGAGTG-CG 336048 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 |||| |||| ||||| ||||| ||||||| |||||||| ||| Sbjct 336049 GCCGTCTTCCAGCTGCTTCCCGGCGAATATCAACCGCTGCTGGTCC 336094 >seq75 Length=1220249 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || |||||||||| || || |||||||| || ||| ||||| ||||||||||| ||| Sbjct 48673 CCACCTCTCAGCCTCAAGACAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCAGCC 48614 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || ||| | || || | |||||| || ||||| ||||| | || ||||| || Sbjct 48613 AAGGTTCGGCCATCTTCGAGTTGCTTACCAGCAAAGATCAGCCTTTGTTGATCAGGTGGT 48554 Query 34021 ACGCTCTCTTTGTCC 34035 | | |||||||||| Sbjct 48553 ATACCCTCTTTGTCC 48539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397022786325172