Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq279 140 7e-28 seq339 116 8e-21 >seq279 Length=1218690 Score = 140 bits (154), Expect = 7e-28 Identities = 570/882 (65%), Gaps = 36/882 (4%) Strand=Plus/Plus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 ||||| ||||| || || | || ||||| ||||| ||||| || | ||| |||| ||| Sbjct 624560 TTCCCAATCCACTACCCACAGATCTGGGAGATGTACAAGAAAGCCGAAGCATCCTTCTGG 624619 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCA-GACGTCGTCGACTGGCGCGAGAAA---CTCAA 242990 ||| |||| ||||| ||| | | || ||| | ||| ||| ||||| ||||| Sbjct 624620 ACCGCCGAAGAAGTAGATCT-ATCACAAGACAACCGCGATTGG---GAGAACAGTCTCAA 624675 Query 242991 TGACGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTAT 243050 |||| ||||||||| |||||||||||| | || | ||| ||||| | |||||| ||||| Sbjct 624676 CGACGGCGAACGTCACTTCATCAAACACGTCCTCGCTTTCTTCGCTGCCTCCGACGGTAT 624735 Query 243051 TGTGATGGAAAATCTGCAGACCAACTTTAGTGT-GGAAGTAACGGTTCCAGAGGCACGGC 243109 || | || ||||| | | | || ||| || || || | ||||| || Sbjct 624736 CGTTCTAGAGAATCT-CGCATCTCGGTTCATGTCCGATGTCCAAGTCTCGGAGGCGCGTG 624794 Query 243110 AATTTTATGCTTACCAAA----CATTCAACGAATCTATCCATTCTGAACAATATGCTCTT 243165 || || | || ||| | ||| | ||| ||| || ||||| ||| |||| Sbjct 624795 CTTTCTACGGTTTCCAGATCGCGATTGA--GAA--TATACACTCTGAGATGTATAGTCTT 624850 Query 243166 CTTATCGACGCGCTTATTTC--AGATGAACAAGAGCGAAACGAGCTTTTCGACGCCATCG 243223 ||| |||| |||| || ||| | ||||| || || | || ||| || || | Sbjct 624851 CTTCTCGA--TACTTACATCAAAGACAACAAAGAGAGAGACCATCTCTTCCGTGCGATTG 624908 Query 243224 AAAACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACCCGG-- 243281 | | ||||| || || || || | ||||| ||| ||| | || ||| Sbjct 624909 AGACGATTCCTTGTGTCGCGAAGAAAGCTCAGTGGGCGATGAAATGGATCGA---CGGAT 624965 Query 243282 -TAAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCG 243340 | | | || ||||| || |||| || | | |||||||||||||| | || |||| Sbjct 624966 CTCAGACCTTCGCTGAACGAATCGTTGCTTTCGCTTGCGTTGAAGGTATCTTCTTCTCCG 625025 Query 243341 GGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGT 243400 | || ||||| ||||||| ||||| ||| ||| | |||||||| | | | | Sbjct 625026 GAAGCTTCTGTTCCATCTTCTGGCTTAAGAAACGAGGACTCATGCCTGGGTTAACTTTCT 625085 Query 243401 CTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTAT 243459 | ||||| | ||| ||| ||||| ||| | ||| | |||| ||| ||||| || Sbjct 625086 CAAACGAACTGATCTCTCGAGACGAAGGCTTACACTGCGACTTCGCGTG-TCTTATCTAC 625144 Query 243460 TCAAAGCTCCAGAACAAGCTACCATTCGAAACG---GTCAAACAAATCATCACAGAAGCA 243516 || ||| | | ||||| |||| | || || ||| | || || Sbjct 625145 ACACTCCTCAAAACGAAGCT---TAGCGAAGAGCGCGTGAAGTCGATCGTGTGCGACGCT 625201 Query 243517 GTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAAC 243576 || || | ||| | ||| || | |||||||| |||| ||| | | |||| |||||| Sbjct 625202 GTGGAGATCGAGAGGGAGTTTGTGTGCGACGCGCTTCCTTGCGCGTTGGTTGGGATGAAC 625261 Query 243577 TCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGT 243636 || | ||| | ||||| || || || ||||| || | || | |||||||| Sbjct 625262 CAGGATTTGATGAGTCAGTATATTGAGTTTGTAGCGGATAGGCTTCTGGGTGCGCTTGGG 625321 Query 243637 TATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAA 243696 || | || |||||| | || || |||| | ||||| || || ||||||||| Sbjct 625322 TACGGTAAGGTGTACGGTGTGACTAATCCTTTTGATTGGATGGAACTTATCTCGCTTCAA 625381 Query 243697 GGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAA 243738 ||||| || ||||||||||| || || || | ||||| ||| Sbjct 625382 GGGAAGACCAACTTCTTCGAGAAACGCGTTGGCGATTACCAA 625423 >seq339 Length=148954 Score = 116 bits (128), Expect = 8e-21 Identities = 304/457 (67%), Gaps = 14/457 (3%) Strand=Plus/Plus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 || ||||| || |||| || | | || ||||||||||| | || ||||| || ||| Sbjct 22624 TTCGCTGAACGAATCGTTGCTTTCGCTTGTGTTGAAGGTATCTTCTTCTCCGGAAGCTTC 22683 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408 || ||||||| ||||| ||| ||| | |||||||| | | | || ||||| Sbjct 22684 TGTTCCATCTTCTGGCTTAAGAAACGAGGACTCATGCCTGGGTTAACTTTCTCAAACGAA 22743 Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTATTCAAAGCT 243467 || ||| ||| ||||| ||| | ||| | |||| ||| ||||| || | ||| Sbjct 22744 TTGATCTCTCGAGACGAAGGCTTACACTGCGACTTCGCGTGT-CTTATCTACAC---GCT 22799 Query 243468 CC--AGAAC-AAGCTACCATTCGAAACG---GTCAAACAAATCATCACAGAAGCAGTTGA 243521 || | ||| ||||| |||| | || || ||| | || || || || Sbjct 22800 CCTCAAAACGAAGCTTAG---CGAAGAGCGCGTGAAGTCGATCGTATGCGACGCGGTGGA 22856 Query 243522 AAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGA 243581 | ||| | ||| || |||||||||| |||| ||| | | |||| |||||| || Sbjct 22857 GATCGAGAGGGAGTTTGTTTGCGACGCGCTTCCCTGCGCGTTGGTTGGGATGAACCAGGA 22916 Query 243582 ACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGA 243641 | ||| | ||||| || || || ||||| || | |||| |||||||| || | Sbjct 22917 TTTGATGAGTCAGTATATTGAGTTTGTAGCGGATAGGCTTTTGGGTGCGCTTGGGTACGG 22976 Query 243642 GAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAA 243701 ||| |||||| | || || |||| | ||||| || || |||||||||||||| Sbjct 22977 GAAGGTGTACGGTGTGACTAATCCTTTTGATTGGATGGAACTTATCTCGCTTCAAGGGAA 23036 Query 243702 AACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAA 243738 |||||||||||||| || || || | ||||| ||| Sbjct 23037 GACTAACTTCTTCGAGAAACGCGTTGGCGATTACCAA 23073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102764326499100