Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq279 114 2e-20 seq358 113 5e-20 seq339 111 2e-19 seq299 98.7 1e-15 seq475 95.1 1e-14 seq120 89.7 6e-13 >seq279 Length=1218690 Score = 114 bits (126), Expect = 2e-20 Identities = 185/262 (71%), Gaps = 7/262 (3%) Strand=Plus/Minus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 || ||||| || ||||| ||||| || ||||| | || |||||||| || || ||| Sbjct 625113 CCTTCGTCTCGAGAGATCAGTTCGTTTGAGAAAGTTAACCCAGGCATGAGTCCTCGTTTC 625054 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 || | |||||| || | ||| || || ||||||||||| || || || || ||||| Sbjct 625053 TTAAGCCAGAAGATGGAACAGAAGCTTCCGGAGAAGAAGATACCTTCAACGCAAGCGAAA 624994 Query 126185 GCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGCCCACTGC 126244 |||| || || ||||| |||| | || | ||| | ||| |||||||||||||| Sbjct 624993 GCAACGATTCGTTCAGCGAAGGTCTGAGA---TCCGTCGATCCATTTCATCGCCCACTGA 624937 Query 126245 GCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCT-TTTCTG 126302 || || ||| ||| ||| || | |||| ||||| ||||| | | ||| | | || Sbjct 624936 GCTTTCTTCGCGACACAAGGAATCGTCTCAATCGCACGGAAGAGATGGTCTCTCTCTTTG 624877 Query 126303 ATGGATCTTTGATGTACTTATC 126324 || ||||||||||| |||| Sbjct 624876 TTG--TCTTTGATGTAAGTATC 624857 >seq358 Length=878959 Score = 113 bits (124), Expect = 5e-20 Identities = 250/367 (68%), Gaps = 10/367 (3%) Strand=Plus/Minus Query 10874 TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT--CG 10931 ||||| |||||||||||||| | ||| ||||||| ||| ||||| | |||||||| | Sbjct 821099 TCAAAACCATCCATCTCAGTTAGGAGCTGATTGAGGGTCTGTTCTCTCTCATCATTACCT 821040 Query 10932 CGGGCA-TACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACG 10990 | || | ||| | | || |||| ||||||| || || |||||||| | || || Sbjct 821039 CCACCAATTCCAGTCCCTCT---TTGCCTACCGACAGCATCTATTTCATCTACAAAGACA 820983 Query 10991 ATACACGGTTGATTTTCACGGGCAA-CTTCAAAGATATCTCGGACTCTCTTGGCACCGAC 11049 || || || ||| || ||| ||| ||| | ||| |||||||| ||||||||| Sbjct 820982 ATGCAAGGAGCATTCTCCTTGGCTTTCTTGAAA-AGATCACGGACTCTTGAGGCACCGAC 820924 Query 11050 ACCCACAAACATTTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATT 11108 ||| |||||||| || ||||| | | | | | || | || ||| ||||| | || Sbjct 820923 ACCGACAAACATCTCAACAAACTCAGAACCAG-AGATGGAGAAGAAAGGGACACCAGCTT 820865 Query 11109 CACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGG 11168 |||| || |||||| || | ||||| ||||| || ||||| || || || Sbjct 820864 CACCAGCAATGGCTTTTGCCAAAAGGGTTTTCCCGGTACCAGGAGGACCAATCAGGAGAA 820805 Query 11169 CACCACGTGGGATCCTGGCACCACTTCCAAAGTAGCGCTCAGGTTGTTTAAGGAAGTCCA 11228 |||| |||||| |||||||| || | | | ||| |||| || || || |||| Sbjct 820804 CACCTTTCGGGATCTTGGCACCAACCGCAGTGAACCTCTCGGGTTTCTTCAGAAACTCCA 820745 Query 11229 CGATTTC 11235 | | ||| Sbjct 820744 CCACTTC 820738 >seq339 Length=148954 Score = 111 bits (122), Expect = 2e-19 Identities = 188/268 (70%), Gaps = 7/268 (3%) Strand=Plus/Minus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 || ||||| || ||||| | ||| || ||||| | || |||||||| || || ||| Sbjct 22763 CCTTCGTCTCGAGAGATCAATTCGTTTGAGAAAGTTAACCCAGGCATGAGTCCTCGTTTC 22704 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 || | |||||| || | ||| || || ||||||||||| || || ||||| ||||| Sbjct 22703 TTAAGCCAGAAGATGGAACAGAAGCTTCCGGAGAAGAAGATACCTTCAACACAAGCGAAA 22644 Query 126185 GCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGCCCACTGC 126244 |||| || || ||||| |||| | || | ||| | ||| |||||||||||||| Sbjct 22643 GCAACGATTCGTTCAGCGAAGGTCTGAGA---TCCGTCGATCCATTTCATCGCCCACTGA 22587 Query 126245 GCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCT-TTTCTG 126302 || || ||| ||| || |||| || | ||||| ||||| | | ||| | | || Sbjct 22586 GCTTTCTTCGCGACGCAAGGGATCGTTTCAATCGCACGGAAGAGATGATCTCTCTCTTTG 22527 Query 126303 ATGGATCTTTGATGTACTTATCTATGAG 126330 || ||||||||||| |||| | ||| Sbjct 22526 TTG--TCTTTGATGTAAGTATCGAGGAG 22501 >seq299 Length=980704 Score = 98.7 bits (108), Expect = 1e-15 Identities = 192/279 (69%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 10876 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGG 10935 ||| ||||||||||| ||||| | ||||| ||||| ||||| | |||||||| | Sbjct 813047 AAATCCATCCATCTCTGTCAACAACTGATTAATGGTCTGTTCTCTCTCATCATTTCC--T 812990 Query 10936 CATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 10993 | | ||| || || | | ||| | || || |||||||| ||||| |||||||||||| Sbjct 812989 CCTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCGTCAATCTCATCAATGAAAACGATA 812930 Query 10994 CACGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACC 11052 || || | ||| || || || || | ||| | ||||| ||||| ||||| Sbjct 812929 CAAGG-GGCTTTCGACTTAGCCTTCTCGAACAAATCCCTAACTCTAGATGCACCCACACC 812871 Query 11053 CACAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACC 11112 ||| || | |||||||| | | ||||| || || ||| || || | ||| || Sbjct 812870 CACGAAAAGCTCCACAAACTCTGAGGCGGCGCAAGAGAAGAACGGTACTCCTGCTTCCCC 812811 Query 11113 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151 || | || | ||| | ||||||||| ||||| ||||| Sbjct 812810 AGCCACCGCCCTGGCCAAGAGGGTCTTACCCGTACCAGG 812772 >seq475 Length=165231 Score = 95.1 bits (104), Expect = 1e-14 Identities = 191/279 (68%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 10876 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGG 10935 ||| ||||||||||| ||||| | ||||| ||||| ||||| | |||||||| | Sbjct 6269 AAATCCATCCATCTCTGTCAACAACTGATTAATGGTCTGTTCTCTCTCATCATTTCC--T 6212 Query 10936 CATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 10993 | | ||| || || | | ||| | || || |||||||| ||||| ||||| || ||| Sbjct 6211 CCTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCGTCAATCTCATCAATGAATACAATA 6152 Query 10994 CACGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACC 11052 || || | ||| || ||| || || | ||| | ||||| ||||| ||||| Sbjct 6151 CAAGG-GGCTTTCGACTTGGCCTTCTCGAACAAATCCCTAACTCTAGATGCACCCACACC 6093 Query 11053 CACAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACC 11112 ||| || | |||||||| | | ||||| || || ||| || || | ||| || Sbjct 6092 CACGAAAAGCTCCACAAACTCTGAGGCGGCGCAAGAGAAGAACGGTACTCCTGCTTCCCC 6033 Query 11113 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151 || | || | ||| | ||||||||| ||||| ||||| Sbjct 6032 AGCCACCGCCCTGGCCAAGAGGGTCTTACCCGTACCAGG 5994 >seq120 Length=809644 Score = 89.7 bits (98), Expect = 6e-13 Identities = 245/368 (67%), Gaps = 12/368 (3%) Strand=Plus/Minus Query 10874 TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT--CG 10931 ||||| |||||||||||||||| || ||||| | ||| ||||| | ||||||||| | Sbjct 3463 TCAAAACCATCCATCTCAGTCAGAAGCTGATTAAGGGTCTGTTCTCTTTCATCATTACCT 3404 Query 10932 CGGGC-ATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACG 10990 | | |||||| | | | |||| |||| || || || |||||||| | ||||| Sbjct 3403 CCACCAATACCA---GTTCCTCTTTGCCTACCAACAGCATCTATTTCATCCACAAAAACT 3347 Query 10991 ATACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACA 11050 || ||||| ||| || || || || | ||| ||||| || ||||| ||| Sbjct 3346 ATGCACGGAGCATTCTCTTTTGCTTTTTTGAAAAGATCACGGACCCTTGATGCACCAACA 3287 Query 11051 CCCACAAACATTTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTC 11109 || |||||||| || ||||| | | | | | || | | |||||| || | ||| Sbjct 3286 CCGACAAACATCTCAACAAACTCAGAACCCG-AGATGGAAAAGAAGGGTACACCAGCTTC 3228 Query 11110 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGC 11169 ||| || || ||| || | ||||| || || || ||||| ||| || || | Sbjct 3227 ACCAGCAATAGCTTTTGCCAACAGGGTTTTACCAGTACCAGGAGGACCTATAAGGAGAAC 3168 Query 11170 ACCACGTGGGATCCTGGCACCACTTCCAAAGT--AGCGCTCAGGTTGTTTAAGGAAGTCC 11227 ||| ||||||| ||||||| || ||| | | |||||| | || || || ||| Sbjct 3167 ACCTTTGGGGATCCGGGCACCA--ACCGCAGTAAACCTCTCAGGCTTCTTCAGAAACTCC 3110 Query 11228 ACGATTTC 11235 || | ||| Sbjct 3109 ACCACTTC 3102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597292475792880