Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq6872 107 2e-18 seq353 107 2e-18 seq351 107 2e-18 >seq6872 Length=15469 Score = 107 bits (118), Expect = 2e-18 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 10249 GTGGGATAAGAAACACAGGTCAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAAC 10308 || ||||||| ||||||| |||| || || ||||| ||||| |||||||||||||| Sbjct 14640 GTAGGATAAGCGGCACAGGTGAGAACAAACCCTGCATCAATCTGCTCATCATCAAGGAAA 14699 Query 10309 GATTGATCGCTTTGATCTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCA 10368 || || || || || | || || | | ||| || ||||| |||||||| | | Sbjct 14700 CTCTGGTCAGACTGGTCAACAGATCCAGACACAACTTTACCAGCACAGCTCGAACAAGAA 14759 Query 10369 CCAGCTCGGCACGAGTAGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTAC 10428 ||||| ||||| ||||| | || || || ||||| |||||||| || |||| ||| Sbjct 14760 CCAGCACGGCAAGAGTAAGGCAAATCGATTCCAGCTTCCTCAGCAGCGTCAAGAACGTAG 14819 Query 10429 TGATCGTCAGCACACTCAA 10447 ||||| ||||||||| Sbjct 14820 ACGTCGTCGTCACACTCAA 14838 >seq353 Length=447834 Score = 107 bits (118), Expect = 2e-18 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 10249 GTGGGATAAGAAACACAGGTCAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAAC 10308 || ||||||| ||||||| |||| || || ||||| ||||| |||||||||||||| Sbjct 267011 GTAGGATAAGCGGCACAGGTGAGAACAAACCCTGCATCAATCTGCTCATCATCAAGGAAA 266952 Query 10309 GATTGATCGCTTTGATCTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCA 10368 || || || || || | || || | | ||| || ||||| |||||||| | | Sbjct 266951 CTCTGGTCAGACTGGTCAACAGATCCAGACACAACTTTACCAGCACAGCTCGAACAAGAA 266892 Query 10369 CCAGCTCGGCACGAGTAGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTAC 10428 ||||| ||||| ||||| | || || || ||||| |||||||| || |||| ||| Sbjct 266891 CCAGCACGGCAAGAGTAAGGCAAATCGATTCCAGCTTCCTCAGCAGCGTCAAGAACGTAG 266832 Query 10429 TGATCGTCAGCACACTCAA 10447 ||||| ||||||||| Sbjct 266831 ACGTCGTCGTCACACTCAA 266813 >seq351 Length=837821 Score = 107 bits (118), Expect = 2e-18 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 10249 GTGGGATAAGAAACACAGGTCAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAAC 10308 || ||||||| ||||||| |||| || || ||||| ||||| |||||||||||||| Sbjct 561983 GTAGGATAAGCGGCACAGGTGAGAACAAACCCTGCATCAATCTGCTCATCATCAAGGAAA 562042 Query 10309 GATTGATCGCTTTGATCTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCA 10368 || || || || || | || || | | ||| || || || |||||||| | | Sbjct 562043 CTCTGGTCAGACTGGTCAACAGATCCAGACACAACTTTACCAGCGCAGCTCGAACAAGAA 562102 Query 10369 CCAGCTCGGCACGAGTAGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTAC 10428 ||||| ||||| ||||| | || || || ||||| ||||||||||| |||| ||| Sbjct 562103 CCAGCACGGCAAGAGTAAGGCAAATCGATTCCAGCTTCCTCAGCAGCATCAAGAACGTAG 562162 Query 10429 TGATCGTCAGCACACTCAA 10447 ||||| ||||||||| Sbjct 562163 ACGTCGTCGTCACACTCAA 562181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622061141079840