Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq358 107 2e-18 seq279 100 3e-16 seq339 98.7 1e-15 seq299 96.9 4e-15 seq475 93.3 5e-14 >seq358 Length=878959 Score = 107 bits (118), Expect = 2e-18 Identities = 249/367 (68%), Gaps = 10/367 (3%) Strand=Plus/Minus Query 12789 TCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATT--CG 12846 || || |||||||||||||| | ||| ||||||| ||| ||||| | |||||||| | Sbjct 821099 TCAAAACCATCCATCTCAGTTAGGAGCTGATTGAGGGTCTGTTCTCTCTCATCATTACCT 821040 Query 12847 CGGGCA-TACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACG 12905 | || | ||| | | || |||| ||||||| || || ||||| || | || || Sbjct 821039 CCACCAATTCCAGTCCCTCT---TTGCCTACCGACAGCATCTATTTCATCTACAAAGACA 820983 Query 12906 ATACACGGTTGATTTTCACGGGCAA-CTTCAAAGATATCTCGCACTCTCTTGGCACCGAC 12964 || || || ||| || ||| ||| ||| | ||| || ||||| ||||||||| Sbjct 820982 ATGCAAGGAGCATTCTCCTTGGCTTTCTTGAAA-AGATCACGGACTCTTGAGGCACCGAC 820924 Query 12965 ACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATT 13023 ||| ||||||||||| ||||| | | | | | || | || ||| ||||| | || Sbjct 820923 ACCGACAAACATCTCAACAAACTCAGAACCAG-AGATGGAGAAGAAAGGGACACCAGCTT 820865 Query 13024 CACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGG 13083 |||| || |||||| || | ||||| ||||| || || || || || || Sbjct 820864 CACCAGCAATGGCTTTTGCCAAAAGGGTTTTCCCGGTACCAGGAGGACCAATCAGGAGAA 820805 Query 13084 CACCACGTGGGATCCTGGCACCACTTCCAAAGTAGCGCTCGGGTTGTTTAAGAAAGTCCA 13143 |||| |||||| |||||||| || | | | |||||||| || ||||| |||| Sbjct 820804 CACCTTTCGGGATCTTGGCACCAACCGCAGTGAACCTCTCGGGTTTCTTCAGAAACTCCA 820745 Query 13144 CGATTTC 13150 | | ||| Sbjct 820744 CCACTTC 820738 >seq279 Length=1218690 Score = 100 bits (110), Expect = 3e-16 Identities = 182/262 (69%), Gaps = 7/262 (3%) Strand=Plus/Minus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 || ||||| || ||||| ||||| || ||||| | || |||||||| || || ||| Sbjct 625113 CCTTCGTCTCGAGAGATCAGTTCGTTTGAGAAAGTTAACCCAGGCATGAGTCCTCGTTTC 625054 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 || | |||||| || | ||| || || ||||||||||| || || || || ||||| Sbjct 625053 TTAAGCCAGAAGATGGAACAGAAGCTTCCGGAGAAGAAGATACCTTCAACGCAAGCGAAA 624994 Query 127658 GCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGT 127717 |||| | || || || |||| | || | || | ||| |||||||||||||| Sbjct 624993 GCAACGATTCGTTCAGCGAAGGTCTGAGA---TCCGTCGATCCATTTCATCGCCCACTGA 624937 Query 127718 GCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCT-TTTCTG 127775 || || ||| ||| ||| || | |||| ||||| ||||| | | ||| | | || Sbjct 624936 GCTTTCTTCGCGACACAAGGAATCGTCTCAATCGCACGGAAGAGATGGTCTCTCTCTTTG 624877 Query 127776 ATGGATCTTTGATGTACTTATC 127797 || ||||||||||| |||| Sbjct 624876 TTG--TCTTTGATGTAAGTATC 624857 >seq339 Length=148954 Score = 98.7 bits (108), Expect = 1e-15 Identities = 185/268 (69%), Gaps = 7/268 (3%) Strand=Plus/Minus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 || ||||| || ||||| | ||| || ||||| | || |||||||| || || ||| Sbjct 22763 CCTTCGTCTCGAGAGATCAATTCGTTTGAGAAAGTTAACCCAGGCATGAGTCCTCGTTTC 22704 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 || | |||||| || | ||| || || ||||||||||| || || ||||| ||||| Sbjct 22703 TTAAGCCAGAAGATGGAACAGAAGCTTCCGGAGAAGAAGATACCTTCAACACAAGCGAAA 22644 Query 127658 GCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGT 127717 |||| | || || || |||| | || | || | ||| |||||||||||||| Sbjct 22643 GCAACGATTCGTTCAGCGAAGGTCTGAGA---TCCGTCGATCCATTTCATCGCCCACTGA 22587 Query 127718 GCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCT-TTTCTG 127775 || || ||| ||| || |||| || | ||||| ||||| | | ||| | | || Sbjct 22586 GCTTTCTTCGCGACGCAAGGGATCGTTTCAATCGCACGGAAGAGATGATCTCTCTCTTTG 22527 Query 127776 ATGGATCTTTGATGTACTTATCTATGAG 127803 || ||||||||||| |||| | ||| Sbjct 22526 TTG--TCTTTGATGTAAGTATCGAGGAG 22501 >seq299 Length=980704 Score = 96.9 bits (106), Expect = 4e-15 Identities = 191/278 (69%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGC 12851 || ||||||||||| ||||| | ||||| ||||| ||||| | |||||||| | | Sbjct 813046 AATCCATCCATCTCTGTCAACAACTGATTAATGGTCTGTTCTCTCTCATCATTTCC--TC 812989 Query 12852 ATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATAC 12909 | ||| || || | | ||| | || || |||||||| || |||||||||||||||| Sbjct 812988 CTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCGTCAATCTCATCAATGAAAACGATAC 812929 Query 12910 ACGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 12968 | || | ||| || || || || | ||| | ||||| ||||| |||||| Sbjct 812928 AAGG-GGCTTTCGACTTAGCCTTCTCGAACAAATCCCTAACTCTAGATGCACCCACACCC 812870 Query 12969 ACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCC 13028 || || | ||||||||| | | ||||| || || ||| || || | ||| || Sbjct 812869 ACGAAAAGCTCCACAAACTCTGAGGCGGCGCAAGAGAAGAACGGTACTCCTGCTTCCCCA 812810 Query 13029 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 || | || | ||| | ||||||||| ||||| || || Sbjct 812809 GCCACCGCCCTGGCCAAGAGGGTCTTACCCGTACCAGG 812772 >seq475 Length=165231 Score = 93.3 bits (102), Expect = 5e-14 Identities = 190/278 (68%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGC 12851 || ||||||||||| ||||| | ||||| ||||| ||||| | |||||||| | | Sbjct 6268 AATCCATCCATCTCTGTCAACAACTGATTAATGGTCTGTTCTCTCTCATCATTTCC--TC 6211 Query 12852 ATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATAC 12909 | ||| || || | | ||| | || || |||||||| || |||||||| || |||| Sbjct 6210 CTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCGTCAATCTCATCAATGAATACAATAC 6151 Query 12910 ACGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 12968 | || | ||| || ||| || || | ||| | ||||| ||||| |||||| Sbjct 6150 AAGG-GGCTTTCGACTTGGCCTTCTCGAACAAATCCCTAACTCTAGATGCACCCACACCC 6092 Query 12969 ACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCC 13028 || || | ||||||||| | | ||||| || || ||| || || | ||| || Sbjct 6091 ACGAAAAGCTCCACAAACTCTGAGGCGGCGCAAGAGAAGAACGGTACTCCTGCTTCCCCA 6032 Query 13029 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 || | || | ||| | ||||||||| ||||| || || Sbjct 6031 GCCACCGCCCTGGCCAAGAGGGTCTTACCCGTACCAGG 5994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613444422875760