Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq82 95.1 8e-15 seq61 87.8 1e-12 seq134 86.0 4e-12 seq6139 84.2 2e-11 seq99 84.2 2e-11 seq60 84.2 2e-11 >seq82 Length=470516 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| || ||| || |||||||| | ||| ||||| || || || ||||||||| Sbjct 87646 CCACCTCTCAGACGAAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAATCGGCC 87705 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| || | || || ||| |||| || | | ||||||||||| || Sbjct 87706 AAGGTGCGACCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGATCCGGTGGA 87765 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | || ||||| || || || ||| | | | | || |||| ||| || || Sbjct 87766 ATTCCCTCTTTATCTTGGATCTTAGCTTTGACATTGTCAATGGTATCTGAGCTCTCAACC 87825 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | || |||||||||||||| | ||| || || ||||||||||| Sbjct 87826 TCTAGGGTGATTGTTTTACCCGTGAGAGTCTTCACAAAGATCTGCAT 87872 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||||| || |||||||| | ||| ||||| || || || ||||||||| Sbjct 88102 CCACCTCTTAAACGGAGAACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAATCGGCC 88161 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| || | ||||| ||| | || || || | ||||| |||| || Sbjct 88162 AAGGTGCGGCCATCTTCAAGCTGTTTACCGGCGAAGATCAATCTTTGCTGGTCCGGAGGA 88221 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTA--ATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | |||||| ||||| || ||| ||| || |||| | ||||| | ||| || | Sbjct 88222 ATGCCTTCCTTGTCCTGGATCTTTGCCTTAACATTGTCG--ATGGTGTCAGAGCTCTCGA 88279 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | ||| || || ||||| || | ||||| ||||| || ||||| Sbjct 88280 CCTCAAGAGTGATGGTCTTACCAGTGAGTGTTTTCACGAAAATTTGCAT 88328 >seq61 Length=1440766 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||||| || |||||||| | ||| ||||| || || || ||||||||| Sbjct 1073654 CCACCTCTTAAACGGAGAACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAATCGGCC 1073595 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| || | ||||| ||| | || || || | ||||| |||| || Sbjct 1073594 AAGGTGCGGCCATCTTCAAGCTGTTTACCGGCGAAGATCAATCTTTGCTGGTCCGGAGGA 1073535 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTA--ATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | |||||| |||| || ||| ||| || |||| | ||||| | ||| || | Sbjct 1073534 ATGCCTTCCCTGTCCTGGATCTTTGCCTTAACATTGTCG--ATGGTGTCAGAGCTCTCGA 1073477 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | ||| || || ||||| || | ||||| ||||| || ||||| Sbjct 1073476 CCTCAAGAGTGATGGTCTTACCAGTGAGTGTTTTCACGAAAATTTGCAT 1073428 >seq134 Length=106205 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| | ||| || || | ||| | ||| |||||||| || || ||||| || Sbjct 48917 CCACCTCTGAGACGAAGCACAAGATGGAGAGTAGACTCTTTTTGAATGTTGTAATCAGCA 48976 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| || || || || || |||| || | | ||||||||||| || Sbjct 48977 AGTGTGCGACCATCCTCTAACTGCTTACCAGCAAAGATAAGCCTCTGCTGATCCGGAGGA 49036 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | ||||| ||||| || || ||||| | ||| || || || | ||| || | Sbjct 49037 ATCCCTTCCTTGTCCTGAATCTTAGCTTTAACATTGTCAATA--GTATCAGAGCTCTCAA 49094 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 | ||||||||||| ||||| || || || || || || |||||||||||| Sbjct 49095 CCTCCAAAGTAATGGTTTTGCCAGTCAATGTCTTCACAAAGATCTGCATG 49144 >seq6139 Length=4094 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567 || ||||| || | ||| ||| || || || || || || ||||| || |||| Sbjct 567 AGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCCAAGGTACGGCCATCC 626 Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627 ||||| || || ||| | || || | | ||||||||||| ||| | ||| || ||||| Sbjct 627 TCCAACTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGGGGAATGCCCTCCTTGTCC 686 Query 39628 CATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGT 39686 || || |||| ||| | | | |||||| | ||||||||| || | || || || Sbjct 687 TGGATCTTGGCCTTAA-CGTTGTCGATTGTGTCAGAGCTTTCCACCTCGAGGGTGATAGT 745 Query 39687 TTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || | ||| || |||||||||||||| Sbjct 746 CTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 778 >seq99 Length=1465915 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567 || ||||| || | ||| ||| || || || || || || ||||| || |||| Sbjct 434853 AGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCCAAGGTACGGCCATCC 434912 Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627 ||||| || || ||| | || || | | ||||||||||| ||| | ||| || ||||| Sbjct 434913 TCCAACTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGGGGAATGCCCTCCTTGTCC 434972 Query 39628 CATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGT 39686 || || |||| ||| | | | |||||| | ||||||||| || | || || || Sbjct 434973 TGGATCTTGGCCTTAA-CGTTGTCGATTGTGTCAGAGCTTTCCACCTCGAGGGTGATAGT 435031 Query 39687 TTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || | ||| || |||||||||||||| Sbjct 435032 CTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 435064 >seq60 Length=318476 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| | ||| || |||||||| | |||| ||||| || ||||| || || || Sbjct 55850 CCACCTCTGAGACGAAGCACCAAATGGAGAGTGGACTCTTTCTGGATATTGTAGTCAGCT 55909 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| || |||||||| ||| |||| || | | ||||||||||| || Sbjct 55910 AGTGTGCGACCATCCTCTAATTGTTTACCGGCAAAGATAAGTCTCTGCTGATCCGGTGGG 55969 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTA--ATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | || ||||| || || || ||| || ||| || ||||||| || || | Sbjct 55970 ATTCCCTCTTTATCCTGGATCTTAGCCTTAACATTGTCAATA--GTGTCTGAACTCTCAA 56027 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | || || ||||| || || || || || || ||||||||||| Sbjct 56028 CCTCGAGGGTGATGGTTTTGCCAGTCAACGTCTTCACAAAGATCTGCAT 56076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347334944020538