Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq464 125 9e-24 seq358 125 9e-24 seq299 116 5e-21 seq120 116 5e-21 seq149 113 6e-20 seq475 111 2e-19 seq279 105 8e-18 seq339 104 3e-17 >seq464 Length=218172 Score = 125 bits (138), Expect = 9e-24 Identities = 303/450 (67%), Gaps = 14/450 (3%) Strand=Plus/Plus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 |||||||| || ||||| | | | || |||||| || || | | ||| ||||| Sbjct 74492 CGATCAAACCGTCCTGGCCTCAACAAAGCAGAATCAAGAATGTCTGCTCTATTGGTTGCA 74551 Query 15945 GCGATGACAACAATACC--TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGT 16002 || | || | || ||| |||| | || |||||||||||||||| || | ||||| | Sbjct 74552 GCAACTACGATAACACCAGTGTTACCTT--CAAAACCATCCATCTCAGTTAGGAGCTGAT 74609 Query 16003 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTC 16059 | | || ||||| | ||||||||| || |||| || | | | |||| | | Sbjct 74610 TGAGGGTCTGTTCTCTTTCATCATTACCT---CCACCAATTCCGGTCCCTCTTTGCCTGC 74666 Query 16060 CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGC-GACTTCA 16118 | || ||||| || ||||| | ||||| ||||| || ||| || || ||| | Sbjct 74667 CGACAGCATCTATTTCATCTACAAAGACAATGCAAGGAGCATTCTCCTTGGCTTTCTTGA 74726 Query 16119 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 16178 || ||||| || || | ||| || ||||| ||||||||||| ||||| | | | Sbjct 74727 AA-AGATCACGGACTCTTGAGGCACCGACACCGACAAACATCTCAACAAACTCAGAACCA 74785 Query 16179 GAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 16237 | | || | || ||| || ||| || |||||| ||||||||| || | ||| || || Sbjct 74786 G-AGATGGAGAAGAAAGGCACACCAGCTTCACCAGCAATGGCTTTTGCCAAAAGGGTTTT 74844 Query 16238 ACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAA 16297 || ||||| || ||| ||||| ||||| || |||||||| ||| || Sbjct 74845 CCCGGTACCAGGAGGACCAATCAGGAGAACACCTTTGGGGATCTTGGCACCAACCGCAGT 74904 Query 16298 GTATCTCTCAGGTTGCTTAAGAAAATCCAC 16327 | ||||||| |||| ||| ||||| ||||| Sbjct 74905 GAATCTCTCGGGTTTCTTCAGAAACTCCAC 74934 >seq358 Length=878959 Score = 125 bits (138), Expect = 9e-24 Identities = 303/450 (67%), Gaps = 14/450 (3%) Strand=Plus/Minus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 |||||||| || ||||| | | | || |||||| || || | | ||| ||||| Sbjct 821186 CGATCAAACCGTCCTGGCCTCAACAAAGCAGAATCAAGAATGTCTGCTCTATTGGTTGCA 821127 Query 15945 GCGATGACAACAATACC--TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGT 16002 || | || | || ||| |||| | || |||||||||||||||| || | ||||| | Sbjct 821126 GCAACTACGATAACACCAGTGTTACCTT--CAAAACCATCCATCTCAGTTAGGAGCTGAT 821069 Query 16003 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTC 16059 | | || ||||| | |||||||| || |||| |||| | | |||| | | Sbjct 821068 TGAGGGTCTGTTCTCTCTCATCATTACCT---CCACCAATTCCAGTCCCTCTTTGCCTAC 821012 Query 16060 CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGC-GACTTCA 16118 | || ||||| || ||||| | ||||| ||||| || ||| || || ||| | Sbjct 821011 CGACAGCATCTATTTCATCTACAAAGACAATGCAAGGAGCATTCTCCTTGGCTTTCTTGA 820952 Query 16119 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 16178 || ||||| || || | ||| || ||||| ||||||||||| ||||| | | | Sbjct 820951 AA-AGATCACGGACTCTTGAGGCACCGACACCGACAAACATCTCAACAAACTCAGAACCA 820893 Query 16179 GAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 16237 | | || | || ||| |||||| || |||||| ||||||||| || | ||| || || Sbjct 820892 G-AGATGGAGAAGAAAGGGACACCAGCTTCACCAGCAATGGCTTTTGCCAAAAGGGTTTT 820834 Query 16238 ACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAA 16297 || ||||| || ||| ||||| ||||| || |||||||| ||| || Sbjct 820833 CCCGGTACCAGGAGGACCAATCAGGAGAACACCTTTCGGGATCTTGGCACCAACCGCAGT 820774 Query 16298 GTATCTCTCAGGTTGCTTAAGAAAATCCAC 16327 | | ||||| |||| ||| ||||| ||||| Sbjct 820773 GAACCTCTCGGGTTTCTTCAGAAACTCCAC 820744 >seq299 Length=980704 Score = 116 bits (128), Expect = 5e-21 Identities = 200/283 (71%), Gaps = 12/283 (4%) Strand=Plus/Minus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||||||||| | ||| ||||| || ||||| | |||||||| || Sbjct 813047 AAATCCATCCATCTCTGTCAACAACTGATTAATGGTCTGTTCTCTCTCATCATTTCCT-- 812990 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | ||| ||||| | | ||| | ||||| || ||||||||||||||||| ||||| Sbjct 812989 CCTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCGTCAATCTCATCAATGAAAACGATA 812930 Query 16092 CATGGTTGATTTTCG--CGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 16147 || || | ||||| ||| || || | ||||| || || || | || ||||| Sbjct 812929 CAAGG--GGCTTTCGACTTAGCCTTCTCGAACAAATCCC-TA-ACTCTAGATGCACCCAC 812874 Query 16148 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 16207 ||| || || | ||||||||| | || ||||| || || ||| || || | ||| Sbjct 812873 ACCCACGAAAAGCTCCACAAACTCTGAGGCGGCGCAAGAGAAGAACGGTACTCCTGCTTC 812814 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGC 16250 || || | || | ||| | || |||||||||||||| ||| Sbjct 812813 CCCAGCCACCGCCCTGGCCAAGAGGGTCTTACCCGTACCAGGC 812771 >seq120 Length=809644 Score = 116 bits (128), Expect = 5e-21 Identities = 301/451 (67%), Gaps = 16/451 (4%) Strand=Plus/Minus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 || ||||| || ||||| | || | ||| ||||| || || | | || ||||| Sbjct 3550 CGGTCAAACCGCCCTGGTCTTAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 3491 Query 15945 GCGATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAAAAGCTGG 16001 || | || | || ||| || |||| ||||||||||||||||| |||| |||||| Sbjct 3490 GCAACTACGATAACACCAGT---GTTACCCTCAAAACCATCCATCTCAGTCAGAAGCTGA 3434 Query 16002 TTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCC 16061 |||| || ||||| | ||||||||| || | ||||| | | |||| | || Sbjct 3433 TTAAGGGTCTGTTCTCTTTCATCATTACCTCCACCAATACCAGTTCCTCTTTGCCTACCA 3374 Query 16062 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAG 16121 || ||||| || ||||| | || || ||||| || ||| || || || || Sbjct 3373 ACAGCATCTATTTCATCCACAAAAACTATGCACGGAGCATTCTCTTTTGCTTTTTTGAAA 3314 Query 16122 AGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 16179 ||||| || || |||| || || ||||| ||||||||||| ||||| | | | | Sbjct 3313 AGATCACG--GACCCTTGATGCACCAACACCGACAAACATCTCAACAAACTCAGAACCCG 3256 Query 16180 AACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 16238 | || | | |||||| ||| || |||||| ||||| ||| || | || || ||| Sbjct 3255 -AGATGGAAAAGAAGGGTACACCAGCTTCACCAGCAATAGCTTTTGCCAACAGGGTTTTA 3197 Query 16239 CCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAG 16298 || ||||| || ||| ||||| ||||| || ||| ||| ||| || || Sbjct 3196 CCAGTACCAGGAGGACCTATAAGGAGAACACCTTTGGGGATCCGGGCACCA--ACCGCAG 3139 Query 16299 T--ATCTCTCAGGTTGCTTAAGAAAATCCAC 16327 | | |||||||| | ||| ||||| ||||| Sbjct 3138 TAAACCTCTCAGGCTTCTTCAGAAACTCCAC 3108 >seq149 Length=1704810 Score = 113 bits (124), Expect = 6e-20 Identities = 303/454 (67%), Gaps = 22/454 (5%) Strand=Plus/Plus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 || || || || ||||| | || | ||| ||||| || || | | || ||||| Sbjct 889467 CGGTCGAACCGCCCTGGTCTTAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 889526 Query 15945 GCGATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAAAAGCTGG 16001 || | |||| || ||| || |||| ||||||||||||||||| |||| |||||| Sbjct 889527 GCAACTACAATAACACCAGT---GTTACCCTCAAAACCATCCATCTCAGTCAGAAGCTGA 889583 Query 16002 TTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTT 16058 |||| || ||||| | ||||||||| || |||| || | | | |||| | Sbjct 889584 TTAAGGGTCTGTTCTCTTTCATCATTACCT---CCACCAATTCCGGTTCCTCTTTGCCTA 889640 Query 16059 CCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCA 16118 || || ||||| || ||||| | || || ||||| || ||| || || || Sbjct 889641 CCAACAGCATCTATTTCATCCACAAAAACTATGCACGGAGCATTCTCTTTTGCTTTTTTG 889700 Query 16119 AAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGG 16176 || ||||| || || |||| || || ||||||||||||||||| ||||| | | Sbjct 889701 AAAAGATCACG--GACCCTTGATGCACCAACACCAACAAACATCTCAACAAACTCAGAAC 889758 Query 16177 CGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 16235 | | | || | | |||||| ||| || |||||| ||||| ||| || | || || Sbjct 889759 CCG-AGATGGAAAAGAAGGGTACACCAGCTTCACCAGCAATAGCTTTTGCCAACAGGGTT 889817 Query 16236 TTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCA 16295 ||||| ||||| || ||| ||||| ||||| || ||| ||| ||| || Sbjct 889818 TTACCAGTACCAGGAGGACCTATAAGGAGAACACCTTTGGGGATCCGGGCTCCA--ACCG 889875 Query 16296 AAGT--ATCTCTCAGGTTGCTTAAGAAAATCCAC 16327 ||| | |||||||| | ||| ||||| ||||| Sbjct 889876 CAGTAAACCTCTCAGGCTTCTTCAGAAACTCCAC 889909 >seq475 Length=165231 Score = 111 bits (122), Expect = 2e-19 Identities = 199/283 (70%), Gaps = 12/283 (4%) Strand=Plus/Minus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||||||||| | ||| ||||| || ||||| | |||||||| || Sbjct 6269 AAATCCATCCATCTCTGTCAACAACTGATTAATGGTCTGTTCTCTCTCATCATTTCCT-- 6212 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | ||| ||||| | | ||| | ||||| || ||||||||||||||||| || || Sbjct 6211 CCTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCGTCAATCTCATCAATGAATACAATA 6152 Query 16092 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 16147 || || | ||||| | || || || | ||||| || || || | || ||||| Sbjct 6151 CAAGG--GGCTTTCGACTTGGCCTTCTCGAACAAATCCC-TA-ACTCTAGATGCACCCAC 6096 Query 16148 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 16207 ||| || || | ||||||||| | || ||||| || || ||| || || | ||| Sbjct 6095 ACCCACGAAAAGCTCCACAAACTCTGAGGCGGCGCAAGAGAAGAACGGTACTCCTGCTTC 6036 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGC 16250 || || | || | ||| | || |||||||||||||| ||| Sbjct 6035 CCCAGCCACCGCCCTGGCCAAGAGGGTCTTACCCGTACCAGGC 5993 >seq279 Length=1218690 Score = 105 bits (116), Expect = 8e-18 Identities = 389/602 (65%), Gaps = 18/602 (3%) Strand=Plus/Plus Query 101721 GAACCTCTCCTAGCCCCCACACTAAACAGATTTACTGTGTTCCCCCTGAAGTATCCACAC 101780 || || || ||| |||| || | | ||||||| | ||||||| | | || ||||| Sbjct 624521 GAGCCGCTTCTAACCCCAACCCCAGACAGATTCTGTATGTTCCCAATCCACTACCCACAG 624580 Query 101781 CTCTGGGAACTCTATAAGAAGGCTCAAATGAGTAAT-TGGACTGCTGAAGAGGTAGATCT 101839 ||||||| | || ||||| || | || | | ||||| || ||||| |||||||| Sbjct 624581 ATCTGGGAGATGTACAAGAAAGC-CGAAGCATCCTTCTGGACCGCCGAAGAAGTAGATCT 624639 Query 101840 CTCAAAGGATTTGGACGATTGGAAGAC---TCTAAATGAAAATGAAAAGAAATTCATAAA 101896 ||| | || ||||||| ||| ||| || || ||| | ||||| || Sbjct 624640 ATCACAAGACAACCGCGATTGGGAGAACAGTCTCAACGACGGCGAACGTCACTTCATCAA 624699 Query 101897 ATACATCCTGGCATTCTTTGCTGGGTCCGATGGAATTGTTTTTGAGAATATCAATAACAA 101956 | || |||| || ||||| |||| ||||| || || ||| | |||||| || || Sbjct 624700 ACACGTCCTCGCTTTCTTCGCTGCCTCCGACGGTATCGTTCTAGAGAATCTCG----CAT 624755 Query 101957 CTTTGCTGATG----AGGTGCAATCCTCTGAAGCGAGATCTTTCTATGCGTATCAATGTC 102012 || | | ||| | || ||| ||| || ||| | ||||||| | || || | || Sbjct 624756 CTCGGTTCATGTCCGATGTCCAAGTCTCGGAGGCGCGTGCTTTCTACG-GTTTCCAGATC 624814 Query 102013 ATAAT-GAAATGGTGCATGGGGAGACATACAGTAAACTCATAGACAAGTATATTAAGGAT 102071 || || | | || |||| || ||| || | || | || || || || Sbjct 624815 GCGATTGAGAATATACACTCTGAGATGTATAGTCTTCTTCTCGATACTTACATCAAAGAC 624874 Query 102072 GGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAA 102131 |||| | || ||||| || || | || |||| ||| | |||||| Sbjct 624875 AACAAAGAGAGAGACCATCTCTTCCGTGCGATTGAGACGATTCCTTGTGTCGCGAAGAAA 624934 Query 102132 GCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTC 102191 || | ||||| ||||| ||| | || | || | |||| ||||| ||| || | Sbjct 624935 GCTCAGTGGGCGATGAAATGGATCGACGGA---TCTCAGACCTTCGCTGAACGAATCGTT 624991 Query 102192 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTC 102251 || || || || ||||| |||||||||||||| || |||||| | || | ||||| Sbjct 624992 GCTTTCGCTTGCGTTGAAGGTATCTTCTTCTCCGGAAGCTTCTGTTCCATCTTCTGGCTT 625051 Query 102252 AAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAG 102311 ||||| ||||| |||||||| || | ||||| ||||| || |||||||| ||||| Sbjct 625052 AAGAAACGAGGACTCATGCCTGGGTTAACTTTCTCAAACGAACTGATCTCTCGAGACGAA 625111 Query 102312 GG 102313 || Sbjct 625112 GG 625113 >seq339 Length=148954 Score = 104 bits (114), Expect = 3e-17 Identities = 136/188 (72%), Gaps = 3/188 (2%) Strand=Plus/Plus Query 102126 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGA 102185 |||||||| | ||||| ||||| ||| | || | || | |||| ||||| ||| Sbjct 22579 AAGAAAGCTCAGTGGGCGATGAAATGGATCGACGGA---TCTCAGACCTTCGCTGAACGA 22635 Query 102186 CTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTAT 102245 || | || || || |||||||| |||||||||||||| || |||||| | || | Sbjct 22636 ATCGTTGCTTTCGCTTGTGTTGAAGGTATCTTCTTCTCCGGAAGCTTCTGTTCCATCTTC 22695 Query 102246 TGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGT 102305 ||||| ||||| ||||| |||||||| || | ||||| ||||| | |||||||| Sbjct 22696 TGGCTTAAGAAACGAGGACTCATGCCTGGGTTAACTTTCTCAAACGAATTGATCTCTCGA 22755 Query 102306 GACGAGGG 102313 ||||| || Sbjct 22756 GACGAAGG 22763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620678882533920