Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq339 109 6e-19 seq279 109 6e-19 >seq339 Length=148954 Score = 109 bits (120), Expect = 6e-19 Identities = 134/178 (75%), Gaps = 10/178 (6%) Strand=Plus/Minus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGT----CCAGGCATGAGTCCTCT 119569 ||||| || |||||||| | || || ||| ||||| |||||||||||||||| Sbjct 22763 CCTTCGTCTCGAGAGATCAATTCGTT--TGAG--AAAGTTAACCCAGGCATGAGTCCTCG 22708 Query 119570 TTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGC 119629 |||||| ||||| ||||||| ||| || ||||| || |||||||| || || ||||| || Sbjct 22707 TTTCTTAAGCCAGAAGATGGAACAGAAGCTTCCGGAGAAGAAGATACCTTCAACACAAGC 22648 Query 119630 GAAAGCGAATAGACGCTCAGCAAAAGGTC-GAGACTTGTCGAACCACTTGAGAGCCCA 119686 |||||| | | || ||||| |||||| |||| ||||| ||| || | ||||| Sbjct 22647 GAAAGCAACGATTCGTTCAGC-GAAGGTCTGAGATCCGTCGATCCATTTCATCGCCCA 22591 >seq279 Length=1218690 Score = 109 bits (120), Expect = 6e-19 Identities = 134/178 (75%), Gaps = 10/178 (6%) Strand=Plus/Minus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGT----CCAGGCATGAGTCCTCT 119569 ||||| || |||||||| || || || ||| ||||| |||||||||||||||| Sbjct 625113 CCTTCGTCTCGAGAGATCAGTTCGTT--TGAG--AAAGTTAACCCAGGCATGAGTCCTCG 625058 Query 119570 TTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGC 119629 |||||| ||||| ||||||| ||| || ||||| || |||||||| || || || || || Sbjct 625057 TTTCTTAAGCCAGAAGATGGAACAGAAGCTTCCGGAGAAGAAGATACCTTCAACGCAAGC 624998 Query 119630 GAAAGCGAATAGACGCTCAGCAAAAGGTC-GAGACTTGTCGAACCACTTGAGAGCCCA 119686 |||||| | | || ||||| |||||| |||| ||||| ||| || | ||||| Sbjct 624997 GAAAGCAACGATTCGTTCAGC-GAAGGTCTGAGATCCGTCGATCCATTTCATCGCCCA 624941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588915733030800