Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq464 129 7e-25 seq358 129 7e-25 seq475 122 1e-22 seq299 116 4e-21 seq120 116 4e-21 seq149 113 5e-20 seq279 98.7 1e-15 seq339 96.9 4e-15 >seq464 Length=218172 Score = 129 bits (142), Expect = 7e-25 Identities = 299/447 (67%), Gaps = 8/447 (2%) Strand=Plus/Plus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 |||||||| || ||||| | | | || |||||| || || | | ||| || || Sbjct 74492 CGATCAAACCGTCCTGGCCTCAACAAAGCAGAATCAAGAATGTCTGCTCTATTGGTTGCA 74551 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 || | || | || ||| || | | ||||||||||||||||| || | || || || Sbjct 74552 GCAACTACGATAACACCAGTGTTACCTTCAAAACCATCCATCTCAGTTAGGAGCTGATTG 74611 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 9368 | || ||||| | ||||||||| || |||| || | | | |||| | || Sbjct 74612 AGGGTCTGTTCTCTTTCATCATTACCTCC---ACCAATTCCGGTCCCTCTTTGCCTGCCG 74668 Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428 || ||||| || ||||| | |||||||| || || ||| || ||| | | || Sbjct 74669 ACAGCATCTATTTCATCTACAAAGACAATGCAAGGAGCATTCTCCTTGGCTTTCTTGAAA 74728 Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9488 ||||| || || ||| ||| || ||||| ||||||||||| ||||| | | | | | Sbjct 74729 AGATCACGGACTCTTGAGGCACCGACACCGACAAACATCTCAACAAACTCAGAACCAG-A 74787 Query 9489 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547 || | || ||| || ||| || |||||| ||||||||| || | ||| || || || Sbjct 74788 GATGGAGAAGAAAGGCACACCAGCTTCACCAGCAATGGCTTTTGCCAAAAGGGTTTTCCC 74847 Query 9548 CGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGTA 9607 ||||| || ||| ||||| |||| || |||||||| ||| || | | Sbjct 74848 GGTACCAGGAGGACCAATCAGGAGAACACCTTTGGGGATCTTGGCACCAACCGCAGTGAA 74907 Query 9608 TCTCTCAGGTTGCTTGAGAAAATCCAC 9634 |||||| |||| ||| ||||| ||||| Sbjct 74908 TCTCTCGGGTTTCTTCAGAAACTCCAC 74934 >seq358 Length=878959 Score = 129 bits (142), Expect = 7e-25 Identities = 299/447 (67%), Gaps = 8/447 (2%) Strand=Plus/Minus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 |||||||| || ||||| | | | || |||||| || || | | ||| || || Sbjct 821186 CGATCAAACCGTCCTGGCCTCAACAAAGCAGAATCAAGAATGTCTGCTCTATTGGTTGCA 821127 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 || | || | || ||| || | | ||||||||||||||||| || | || || || Sbjct 821126 GCAACTACGATAACACCAGTGTTACCTTCAAAACCATCCATCTCAGTTAGGAGCTGATTG 821067 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 9368 | || ||||| | |||||||| || |||| |||| | | |||| | || Sbjct 821066 AGGGTCTGTTCTCTCTCATCATTACCTCC---ACCAATTCCAGTCCCTCTTTGCCTACCG 821010 Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428 || ||||| || ||||| | |||||||| || || ||| || ||| | | || Sbjct 821009 ACAGCATCTATTTCATCTACAAAGACAATGCAAGGAGCATTCTCCTTGGCTTTCTTGAAA 820950 Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9488 ||||| || || ||| ||| || ||||| ||||||||||| ||||| | | | | | Sbjct 820949 AGATCACGGACTCTTGAGGCACCGACACCGACAAACATCTCAACAAACTCAGAACCAG-A 820891 Query 9489 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547 || | || ||| |||||| || |||||| ||||||||| || | ||| || || || Sbjct 820890 GATGGAGAAGAAAGGGACACCAGCTTCACCAGCAATGGCTTTTGCCAAAAGGGTTTTCCC 820831 Query 9548 CGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGTA 9607 ||||| || ||| ||||| |||| || |||||||| ||| || | | Sbjct 820830 GGTACCAGGAGGACCAATCAGGAGAACACCTTTCGGGATCTTGGCACCAACCGCAGTGAA 820771 Query 9608 TCTCTCAGGTTGCTTGAGAAAATCCAC 9634 ||||| |||| ||| ||||| ||||| Sbjct 820770 CCTCTCGGGTTTCTTCAGAAACTCCAC 820744 >seq475 Length=165231 Score = 122 bits (134), Expect = 1e-22 Identities = 198/281 (70%), Gaps = 8/281 (3%) Strand=Plus/Minus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| ||||||||||||||||| | || ||||| || ||||| | |||||||| || Sbjct 6269 AAATCCATCCATCTCTGTCAACAACTGATTAATGGTCTGTTCTCTCTCATCATTTCCT-- 6212 Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | | ||| ||||| | | ||| | ||||| || ||||||||||||||||| |||||| Sbjct 6211 CCTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCGTCAATCTCATCAATGAATACAATA 6152 Query 9399 CATGGTTGATTTTCG--CGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACAC 9456 || || | ||||| ||| | || || | ||| | ||| || || ||||||| Sbjct 6151 CAAGG--GGCTTTCGACTTGGCCTTCTCGAACAAATCCCTAACTCTAGATGCACCCACAC 6094 Query 9457 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 9516 | || || | ||||||||| | || ||||| || || ||| || || | ||| | Sbjct 6093 CCACGAAAAGCTCCACAAACTCTGAGGCGGCGCAAGAGAAGAACGGTACTCCTGCTTCCC 6034 Query 9517 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGC 9557 | || | || | ||| | || |||||||||||||| ||| Sbjct 6033 CAGCCACCGCCCTGGCCAAGAGGGTCTTACCCGTACCAGGC 5993 >seq299 Length=980704 Score = 116 bits (128), Expect = 4e-21 Identities = 254/374 (68%), Gaps = 10/374 (3%) Strand=Plus/Minus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| ||||||||||||||||| | || ||||| || ||||| | |||||||| || Sbjct 813047 AAATCCATCCATCTCTGTCAACAACTGATTAATGGTCTGTTCTCTCTCATCATTTCCT-- 812990 Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | | ||| ||||| | | ||| | ||||| || ||||||||||||||||| || ||| Sbjct 812989 CCTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCGTCAATCTCATCAATGAAAACGATA 812930 Query 9399 CATGGTTGATTTTCG--CGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACAC 9456 || || | ||||| || | || || | ||| | ||| || || ||||||| Sbjct 812929 CAAGG--GGCTTTCGACTTAGCCTTCTCGAACAAATCCCTAACTCTAGATGCACCCACAC 812872 Query 9457 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 9516 | || || | ||||||||| | || ||||| || || ||| || || | ||| | Sbjct 812871 CCACGAAAAGCTCCACAAACTCTGAGGCGGCGCAAGAGAAGAACGGTACTCCTGCTTCCC 812812 Query 9517 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCAC 9576 | || | || | ||| | || |||||||||||||| ||| || | || | ||| Sbjct 812811 CAGCCACCGCCCTGGCCAAGAGGGTCTTACCCGTACCAGGCGGTCCAACAAGCA-AACAC 812753 Query 9577 CCCGT-GGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACA 9635 || | ||||||||||| || | ||| | ||||| | ||| | ||||||||| Sbjct 812752 CCTTTAGGAATCTTGGCACCCAAGGCTGTGTACTTATCAGGATTCTTCAAGAAATCCACA 812693 Query 9636 ATCTCTTCCAATTC 9649 | || | ||||| Sbjct 812692 ACTTCCTGTAATTC 812679 >seq120 Length=809644 Score = 116 bits (128), Expect = 4e-21 Identities = 296/446 (66%), Gaps = 6/446 (1%) Strand=Plus/Minus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 || ||||| || ||||| | || | ||| ||||| || || | | || || || Sbjct 3550 CGGTCAAACCGCCCTGGTCTTAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 3491 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 || | || | || ||| || | | ||||||||||||||||| |||| ||| || ||| Sbjct 3490 GCAACTACGATAACACCAGTGTTACCCTCAAAACCATCCATCTCAGTCAGAAGCTGATTA 3431 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACG 9371 | || ||||| | ||||||||| || | ||||| | | |||| | || || Sbjct 3430 AGGGTCTGTTCTCTTTCATCATTACCTCCACCAATACCAGTTCCTCTTTGCCTACCAACA 3371 Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 9431 ||||| || ||||| | || || || || || ||| || || ||| || ||| Sbjct 3370 GCATCTATTTCATCCACAAAAACTATGCACGGAGCATTCTCTTTTGCTTTTTTGAAAAGA 3311 Query 9432 TCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 9491 || || |||||| || || ||||| ||||||||||| ||||| | | | | | || Sbjct 3310 TCACGGACCCTTGATGCACCAACACCGACAAACATCTCAACAAACTCAGAACCCG-AGAT 3252 Query 9492 TG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9550 | | |||||| ||| || |||||| ||||| ||| || | || || ||||| || Sbjct 3251 GGAAAAGAAGGGTACACCAGCTTCACCAGCAATAGCTTTTGCCAACAGGGTTTTACCAGT 3192 Query 9551 ACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGT--AT 9608 ||| || ||| ||||| |||| || ||| ||| ||| || ||| | Sbjct 3191 ACCAGGAGGACCTATAAGGAGAACACCTTTGGGGATCCGGGCACCA--ACCGCAGTAAAC 3134 Query 9609 CTCTCAGGTTGCTTGAGAAAATCCAC 9634 |||||||| | ||| ||||| ||||| Sbjct 3133 CTCTCAGGCTTCTTCAGAAACTCCAC 3108 >seq149 Length=1704810 Score = 113 bits (124), Expect = 5e-20 Identities = 298/449 (66%), Gaps = 12/449 (3%) Strand=Plus/Plus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 || || || || ||||| | || | ||| ||||| || || | | || || || Sbjct 889467 CGGTCGAACCGCCCTGGTCTTAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 889526 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 || | |||| || ||| || | | ||||||||||||||||| |||| ||| || ||| Sbjct 889527 GCAACTACAATAACACCAGTGTTACCCTCAAAACCATCCATCTCAGTCAGAAGCTGATTA 889586 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 9368 | || ||||| | ||||||||| || |||| || | | | |||| | || Sbjct 889587 AGGGTCTGTTCTCTTTCATCATTACCT---CCACCAATTCCGGTTCCTCTTTGCCTACCA 889643 Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428 || ||||| || ||||| | || || || || || ||| || || ||| || Sbjct 889644 ACAGCATCTATTTCATCCACAAAAACTATGCACGGAGCATTCTCTTTTGCTTTTTTGAAA 889703 Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9488 ||||| || |||||| || || ||||||||||||||||| ||||| | | | | | Sbjct 889704 AGATCACGGACCCTTGATGCACCAACACCAACAAACATCTCAACAAACTCAGAACCCG-A 889762 Query 9489 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547 || | | |||||| ||| || |||||| ||||| ||| || | || || ||||| Sbjct 889763 GATGGAAAAGAAGGGTACACCAGCTTCACCAGCAATAGCTTTTGCCAACAGGGTTTTACC 889822 Query 9548 CGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGT- 9606 ||||| || ||| ||||| |||| || ||| ||| ||| || ||| Sbjct 889823 AGTACCAGGAGGACCTATAAGGAGAACACCTTTGGGGATCCGGGCTCCA--ACCGCAGTA 889880 Query 9607 -ATCTCTCAGGTTGCTTGAGAAAATCCAC 9634 | |||||||| | ||| ||||| ||||| Sbjct 889881 AACCTCTCAGGCTTCTTCAGAAACTCCAC 889909 >seq279 Length=1218690 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/200 (71%), Gaps = 3/200 (2%) Strand=Plus/Minus Query 117292 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351 || || ||||| || || ||||| |||||||| || || |||||||| || || ||| Sbjct 625113 CCTTCGTCTCGAGAGATCAGTTCGTTTGAGAAAGTTAACCCAGGCATGAGTCCTCGTTTC 625054 Query 117352 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 || | ||| | || | ||||| ||||||||||||||||| || || || || || Sbjct 625053 TTAAGCCAGAAGATGGAACAGAAGCTTCCGGAGAAGAAGATACCTTCAACGCAAGCGAAA 624994 Query 117412 GCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGCCCATTTC 117471 |||| | || || ||||||| |||| | ||| | ||||||||| ||||| | Sbjct 624993 GCAACGATTCGTTCAGCGAAGGTCTGAGA---TCCGTCGATCCATTTCATCGCCCACTGA 624937 Query 117472 GCCTTCTTCTCAATACATGG 117491 || |||||| | | ||| || Sbjct 624936 GCTTTCTTCGCGACACAAGG 624917 >seq339 Length=148954 Score = 96.9 bits (106), Expect = 4e-15 Identities = 135/189 (71%), Gaps = 3/189 (2%) Strand=Plus/Minus Query 117292 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351 || || ||||| || || | ||| |||||||| || || |||||||| || || ||| Sbjct 22763 CCTTCGTCTCGAGAGATCAATTCGTTTGAGAAAGTTAACCCAGGCATGAGTCCTCGTTTC 22704 Query 117352 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 || | ||| | || | ||||| ||||||||||||||||| || ||||| || || Sbjct 22703 TTAAGCCAGAAGATGGAACAGAAGCTTCCGGAGAAGAAGATACCTTCAACACAAGCGAAA 22644 Query 117412 GCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGCCCATTTC 117471 |||| | || || ||||||| |||| | ||| | ||||||||| ||||| | Sbjct 22643 GCAACGATTCGTTCAGCGAAGGTCTGAGA---TCCGTCGATCCATTTCATCGCCCACTGA 22587 Query 117472 GCCTTCTTC 117480 || |||||| Sbjct 22586 GCTTTCTTC 22578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589920430214640