Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq6872 136 5e-27 seq353 136 5e-27 seq351 127 2e-24 seq7903 87.8 2e-12 >seq6872 Length=15469 Score = 136 bits (150), Expect = 5e-27 Identities = 135/175 (77%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 171907 TTCTGGACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGTGCCGGTGCCT 171966 |||| |||||||| || ||||| || | ||| || || || |||||||| ||| | | Sbjct 14814 TTCTTGACGCTGCTGAGGAAGCTGGAATCGATTTGCCTTACTCTTGCCGTGCTGGTTCTT 14755 Query 171967 GTTCCAGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGAGCAATCTTTCC 172026 |||| ||||||||||||||| ||| | ||| | || || ||||| || || ||||| Sbjct 14754 GTTCGAGCTGTGCTGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGTTTCC 14695 Query 172027 TTGATGATGATCAAATGGACGCAGGATTCGTTCTGACCTGTGTTGCTTATCCTAC 172081 |||||||||| || || || ||||| || ||||| ||||||| ||||||||||| Sbjct 14694 TTGATGATGAGCAGATTGATGCAGGGTTTGTTCTCACCTGTGCCGCTTATCCTAC 14640 >seq353 Length=447834 Score = 136 bits (150), Expect = 5e-27 Identities = 135/175 (77%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 171907 TTCTGGACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGTGCCGGTGCCT 171966 |||| |||||||| || ||||| || | ||| || || || |||||||| ||| | | Sbjct 266837 TTCTTGACGCTGCTGAGGAAGCTGGAATCGATTTGCCTTACTCTTGCCGTGCTGGTTCTT 266896 Query 171967 GTTCCAGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGAGCAATCTTTCC 172026 |||| ||||||||||||||| ||| | ||| | || || ||||| || || ||||| Sbjct 266897 GTTCGAGCTGTGCTGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGTTTCC 266956 Query 172027 TTGATGATGATCAAATGGACGCAGGATTCGTTCTGACCTGTGTTGCTTATCCTAC 172081 |||||||||| || || || ||||| || ||||| ||||||| ||||||||||| Sbjct 266957 TTGATGATGAGCAGATTGATGCAGGGTTTGTTCTCACCTGTGCCGCTTATCCTAC 267011 >seq351 Length=837821 Score = 127 bits (140), Expect = 2e-24 Identities = 133/175 (76%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 171907 TTCTGGACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGTGCCGGTGCCT 171966 |||| || ||||| || ||||| || | ||| || || || |||||||| ||| | | Sbjct 562157 TTCTTGATGCTGCTGAGGAAGCTGGAATCGATTTGCCTTACTCTTGCCGTGCTGGTTCTT 562098 Query 171967 GTTCCAGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGAGCAATCTTTCC 172026 |||| ||||| ||||||||| ||| | ||| | || || ||||| || || ||||| Sbjct 562097 GTTCGAGCTGCGCTGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGTTTCC 562038 Query 172027 TTGATGATGATCAAATGGACGCAGGATTCGTTCTGACCTGTGTTGCTTATCCTAC 172081 |||||||||| || || || ||||| || ||||| ||||||| ||||||||||| Sbjct 562037 TTGATGATGAGCAGATTGATGCAGGGTTTGTTCTCACCTGTGCCGCTTATCCTAC 561983 >seq7903 Length=1346 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | ||||||||||||||||| Sbjct 281 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGATTGGTCGTAGGTTCAAAT 340 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 341 CCTACTTGGGGAG 353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610334341147440