Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq180 131 2e-25 seq94 131 2e-25 seq22 122 1e-22 seq146 116 4e-21 >seq180 Length=4117863 Score = 131 bits (144), Expect = 2e-25 Identities = 153/205 (75%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 153768 CAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 153827 |||||||||||| |||| ||||| ||||| ||||||||||| || ||||| || || || Sbjct 2981024 CAAAGGTTTGGTGTTCCCATGGGTTATGGTGGTCCTCATGCCGCTTTCTTGGCTACTTCA 2980965 Query 153828 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGTGAAG 153885 | |||||||||||| ||| || || || ||| | | || ||| || ||| | || Sbjct 2980964 CAAGAGTATAAGAGAATGATGCCAGGGAGGATTATCGGTGTTAGT--GTTGATTCTTCAG 2980907 Query 153886 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAG 153945 | || |||| | | || | ||||||||||| |||||||| ||||| ||||||| Sbjct 2980906 GAAAGCAAGCTCTGCGTATGGCTATGCAGACTAGAGAACAGCATATTAGGAGGGACAAAG 2980847 Query 153946 CAACCAGTAACATCTGCACAGCTCA 153970 | || || |||||||| || ||||| Sbjct 2980846 CCACTAGCAACATCTGTACTGCTCA 2980822 Score = 95.1 bits (104), Expect = 1e-14 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 153252 CGAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATA 153311 || ||| || | ||||| || ||||||||| |||||||| |||||||||||||| Sbjct 2981537 CGTAACATTATGGAGAACCCAGCTTGGTACACTCAGTACACTCCTTATCAAGCTGAGATC 2981478 Query 153312 TCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGA 153371 |||||||| | | ||| | | |||||| ||| ||| ||||||| || || || || Sbjct 2981477 TCTCAGGGTCGTCTCGAATCGCTGCTCAATTTCCAGACGGTCATCACCGACCTCACGGGG 2981418 Query 153372 TTACCAATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 153428 | || || | ||||| || || | ||||||| ||||| || || || || ||| Sbjct 2981417 CTTCCCATGTCGAACGCTTCGCTCCTCGATGAAGGGACTGCGGCTGCCGAGGCTATG 2981361 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 155018 TGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGG 155077 ||| || ||||| |||||||| || | || || || ||||||||||| ||||||||||| Sbjct 2979075 TGGAGCCGATGTGTGTCATCTCAATCTCCACAAGACCTTCTGTATTCCTCATGGAGGTGG 2979016 Query 155078 AGGTCCTGGCGTAGGTCCTATAGGTGTAGCAAAACATCTCACACCATTT 155126 |||||||| | ||||| || ||||| |||||| | |||||||| Sbjct 2979015 TGGTCCTGGTATGGGTCCCATTGGTGTGAAGAAACATTTGGCACCATTT 2978967 >seq94 Length=1152725 Score = 131 bits (144), Expect = 2e-25 Identities = 153/205 (75%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 153768 CAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 153827 |||||||||||| |||| ||||| ||||| ||||||||||| || ||||| || || || Sbjct 978512 CAAAGGTTTGGTGTTCCCATGGGTTATGGTGGTCCTCATGCCGCGTTCTTGGCTACTTCA 978453 Query 153828 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGTGAAG 153885 | |||||||||||| ||| || || || ||| | | || ||| || ||| | || Sbjct 978452 CAAGAGTATAAGAGAATGATGCCAGGGAGGATTATCGGTGTTAGT--GTTGATTCTTCAG 978395 Query 153886 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAG 153945 | || |||| | | || | ||||||||||| |||||||| ||||| ||||||| Sbjct 978394 GAAAGCAAGCTCTGCGTATGGCTATGCAGACTAGAGAACAGCATATTAGGAGGGACAAAG 978335 Query 153946 CAACCAGTAACATCTGCACAGCTCA 153970 | || || |||||||| || ||||| Sbjct 978334 CCACTAGCAACATCTGTACTGCTCA 978310 Score = 98.7 bits (108), Expect = 1e-15 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 153252 CGAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATA 153311 || ||| || | ||||| || ||||||||| |||||||| |||||||||||||| Sbjct 979025 CGTAACATTATGGAGAACCCAGCTTGGTACACTCAGTACACTCCTTATCAAGCTGAGATC 978966 Query 153312 TCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGA 153371 |||||||| | | ||| | | |||||| ||||||| ||||||| || || || || Sbjct 978965 TCTCAGGGTCGTCTCGAATCGCTGCTCAATTTCCAAACGGTCATCACCGACCTCACTGGG 978906 Query 153372 TTACCAATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 153428 | || || | ||||| || || | ||||||| ||||| || || || || ||| Sbjct 978905 CTTCCCATGTCGAACGCTTCCCTCCTCGATGAAGGGACTGCGGCTGCGGAGGCTATG 978849 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 155018 TGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGG 155077 ||| || ||||| |||||||| || | || || || ||||||||||| ||||||||||| Sbjct 976562 TGGAGCCGATGTGTGTCATCTCAATCTCCACAAGACCTTCTGTATTCCTCATGGAGGTGG 976503 Query 155078 AGGTCCTGGCGTAGGTCCTATAGGTGTAGCAAAACATCTCACACCATTT 155126 |||||||| | ||||| || ||||| ||||| | |||||||| Sbjct 976502 TGGTCCTGGTATGGGTCCCATTGGTGTGAAGAAACACTTGGCACCATTT 976454 >seq22 Length=1040427 Score = 122 bits (134), Expect = 1e-22 Identities = 167/229 (73%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 153747 GATATTGCTGTAGG-TAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCA 153805 ||||||| ||| || | | | || ||||||||| | || ||||| || || |||||||| Sbjct 179661 GATATTGTTGTTGGATCGGCT-CAGAGGTTTGGTGTACCGATGGGTTACGGTGGTCCTCA 179719 Query 153806 TGCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG- 153864 |||||| ||||| || || || | |||||||||| | ||| ||||| || ||| | | Sbjct 179720 TGCTGCTTTCTTGGCTACTTCACAAGAGTATAAGAGGATGATGCCTGGGAGGATTATTGG 179779 Query 153865 -GTCAGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAG 153923 || ||| || ||| | || || |||| | | | || | ||||||||||| Sbjct 179780 TGTTAGT--GTTGATTCTTTGGGAAAACAAGCTTTGCGTATGGCTATGCAGACTAGAGAA 179837 Query 153924 CAGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGG 153972 || |||||| | || |||||||| ||||| |||||||| || ||||||| Sbjct 179838 CAACATATCCGCAGGGACAAAGCTACCAGCAACATCTGTACTGCTCAGG 179886 Score = 104 bits (114), Expect = 3e-17 Identities = 122/165 (74%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 153264 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 153323 ||||||||| ||||||| || || ||||| |||||||||||||| ||||| ||||| Sbjct 179181 GAGAATCCTGGTTGGTATACTCAGTATACTCCTTATCAAGCTGAGATTTCTCAAGGAAGG 179240 Query 153324 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCA 153383 | || |||| | |||| ||| ||| | ||||| || ||||| || ||||| || | Sbjct 179241 CTTGAGTCTTTGCTTAATTTCCAGACGGTTATCACTGATCTTACTGGTTTACCTATGTCG 179300 Query 153384 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 153428 || || || | | ||||||| || || || || ||||||||| Sbjct 179301 AATGCGTCGTTGCTCGATGAAGGTACCGCGGCTGCGGAAGCAATG 179345 >seq146 Length=173015 Score = 116 bits (128), Expect = 4e-21 Identities = 166/229 (72%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 153747 GATATTGCTGTAGG-TAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCA 153805 ||||||| ||| || | | | || ||||||||| | || ||||| || || |||||||| Sbjct 112027 GATATTGTTGTTGGATCGGCT-CAGAGGTTTGGTGTACCGATGGGTTACGGTGGTCCTCA 111969 Query 153806 TGCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG- 153864 |||||| ||||| || || || | |||||||||| | ||| ||||| || ||| | | Sbjct 111968 TGCTGCTTTCTTGGCTACTTCACAAGAGTATAAGAGGATGATGCCTGGGAGGATTATTGG 111909 Query 153865 -GTCAGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAG 153923 || ||| || ||| | || || |||| | | | || | |||||||| || Sbjct 111908 TGTTAGT--GTTGATTCTTTGGGAAAACAAGCTTTGCGTATGGCTATGCAGACTAGGGAA 111851 Query 153924 CAGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGG 153972 ||||||||| | || || ||||| ||||| |||||||| || ||||||| Sbjct 111850 CAGCATATCCGCAGGGATAAAGCTACCAGCAACATCTGTACTGCTCAGG 111802 Score = 109 bits (120), Expect = 6e-19 Identities = 123/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 153264 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 153323 ||||||||| ||||||| || |||||||| |||||||||||||| ||||| ||||| Sbjct 112507 GAGAATCCTGGTTGGTATACTCAGTACACTCCTTATCAAGCTGAGATTTCTCAAGGAAGG 112448 Query 153324 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCA 153383 | || |||| | |||| ||| ||| | ||||| || ||||| || ||||| || | Sbjct 112447 CTTGAGTCTTTGCTTAATTTCCAGACGGTTATCACTGATCTTACTGGTTTACCTATGTCG 112388 Query 153384 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 153428 || || || | | ||||||| || || || || ||||||||| Sbjct 112387 AATGCGTCGTTGCTCGATGAAGGTACCGCGGCTGCGGAAGCAATG 112343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579153532050240