Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq180 116 4e-21 seq94 116 4e-21 seq22 113 5e-20 seq146 107 2e-18 >seq180 Length=4117863 Score = 116 bits (128), Expect = 4e-21 Identities = 151/207 (73%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 158443 CAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 158502 |||||||||||| |||| ||||| || || ||||||||||| || ||||| || || || Sbjct 2981024 CAAAGGTTTGGTGTTCCCATGGGTTATGGTGGTCCTCATGCCGCTTTCTTGGCTACTTCA 2980965 Query 158503 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGCGAAG 158560 | |||||||||||| ||| || || || ||| | | || ||| || ||| || Sbjct 2980964 CAAGAGTATAAGAGAATGATGCCAGGGAGGATTATCGGTGTTAGT--GTTGATTCTTCAG 2980907 Query 158561 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAG 158620 | || |||| | | || | ||||||||||| |||||||| || || ||||||| Sbjct 2980906 GAAAGCAAGCTCTGCGTATGGCTATGCAGACTAGAGAACAGCATATTAGGAGGGACAAAG 2980847 Query 158621 CAACCAGTAACATCTGCACAGCACAAG 158647 | || || |||||||| || || |||| Sbjct 2980846 CCACTAGCAACATCTGTACTGCTCAAG 2980820 Score = 104 bits (114), Expect = 3e-17 Identities = 129/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 157927 CGAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATA 157986 || ||| || | ||||| || ||||||||| |||||||| |||||||||||||| Sbjct 2981537 CGTAACATTATGGAGAACCCAGCTTGGTACACTCAGTACACTCCTTATCAAGCTGAGATC 2981478 Query 157987 TCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGA 158046 |||||||| | | ||| | | |||||| ||| ||| ||||||| || ||||| || Sbjct 2981477 TCTCAGGGTCGTCTCGAATCGCTGCTCAATTTCCAGACGGTCATCACCGACCTCACGGGG 2981418 Query 158047 CTACCGATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 || || || | ||||| || || | ||||||| ||||| || || || || ||| Sbjct 2981417 CTTCCCATGTCGAACGCTTCGCTCCTCGATGAAGGGACTGCGGCTGCCGAGGCTATG 2981361 Score = 98.7 bits (108), Expect = 1e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752 ||| || ||||| |||||||| || | || ||||| ||||||||||| ||||||||||| Sbjct 2979075 TGGAGCCGATGTGTGTCATCTCAATCTCCACAAGACCTTCTGTATTCCTCATGGAGGTGG 2979016 Query 159753 AGGTCCTGGCGTAGGTCCTATTGGTGTAGCAAAACATCTCACACCATTT 159801 |||||||| | ||||| |||||||| |||||| | |||||||| Sbjct 2979015 TGGTCCTGGTATGGGTCCCATTGGTGTGAAGAAACATTTGGCACCATTT 2978967 >seq94 Length=1152725 Score = 116 bits (128), Expect = 4e-21 Identities = 151/207 (73%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 158443 CAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 158502 |||||||||||| |||| ||||| || || ||||||||||| || ||||| || || || Sbjct 978512 CAAAGGTTTGGTGTTCCCATGGGTTATGGTGGTCCTCATGCCGCGTTCTTGGCTACTTCA 978453 Query 158503 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGCGAAG 158560 | |||||||||||| ||| || || || ||| | | || ||| || ||| || Sbjct 978452 CAAGAGTATAAGAGAATGATGCCAGGGAGGATTATCGGTGTTAGT--GTTGATTCTTCAG 978395 Query 158561 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAG 158620 | || |||| | | || | ||||||||||| |||||||| || || ||||||| Sbjct 978394 GAAAGCAAGCTCTGCGTATGGCTATGCAGACTAGAGAACAGCATATTAGGAGGGACAAAG 978335 Query 158621 CAACCAGTAACATCTGCACAGCACAAG 158647 | || || |||||||| || || |||| Sbjct 978334 CCACTAGCAACATCTGTACTGCTCAAG 978308 Score = 107 bits (118), Expect = 2e-18 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 157927 CGAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATA 157986 || ||| || | ||||| || ||||||||| |||||||| |||||||||||||| Sbjct 979025 CGTAACATTATGGAGAACCCAGCTTGGTACACTCAGTACACTCCTTATCAAGCTGAGATC 978966 Query 157987 TCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGA 158046 |||||||| | | ||| | | |||||| ||||||| ||||||| || ||||| || Sbjct 978965 TCTCAGGGTCGTCTCGAATCGCTGCTCAATTTCCAAACGGTCATCACCGACCTCACTGGG 978906 Query 158047 CTACCGATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 || || || | ||||| || || | ||||||| ||||| || || || || ||| Sbjct 978905 CTTCCCATGTCGAACGCTTCCCTCCTCGATGAAGGGACTGCGGCTGCGGAGGCTATG 978849 Score = 93.3 bits (102), Expect = 5e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752 ||| || ||||| |||||||| || | || ||||| ||||||||||| ||||||||||| Sbjct 976562 TGGAGCCGATGTGTGTCATCTCAATCTCCACAAGACCTTCTGTATTCCTCATGGAGGTGG 976503 Query 159753 AGGTCCTGGCGTAGGTCCTATTGGTGTAGCAAAACATCTCACACCATTT 159801 |||||||| | ||||| |||||||| ||||| | |||||||| Sbjct 976502 TGGTCCTGGTATGGGTCCCATTGGTGTGAAGAAACACTTGGCACCATTT 976454 >seq22 Length=1040427 Score = 113 bits (124), Expect = 5e-20 Identities = 149/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 158443 CAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 158502 || ||||||||| | || ||||| ||||| |||||||||||||| ||||| || || || Sbjct 179682 CAGAGGTTTGGTGTACCGATGGGTTACGGTGGTCCTCATGCTGCTTTCTTGGCTACTTCA 179741 Query 158503 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGCGAAG 158560 | |||||||||| | ||| ||||| || ||| | | || ||| || ||| | Sbjct 179742 CAAGAGTATAAGAGGATGATGCCTGGGAGGATTATTGGTGTTAGT--GTTGATTCTTTGG 179799 Query 158561 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAG 158620 | || |||| | | | || | ||||||||||| || |||||| | || ||||||| Sbjct 179800 GAAAACAAGCTTTGCGTATGGCTATGCAGACTAGAGAACAACATATCCGCAGGGACAAAG 179859 Query 158621 CAACCAGTAACATCTGCACAGCACA 158645 | ||||| |||||||| || || || Sbjct 179860 CTACCAGCAACATCTGTACTGCTCA 179884 Score = 95.1 bits (104), Expect = 1e-14 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 157939 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 157998 ||||||||| ||||||| || || ||||| |||||||||||||| ||||| ||||| Sbjct 179181 GAGAATCCTGGTTGGTATACTCAGTATACTCCTTATCAAGCTGAGATTTCTCAAGGAAGG 179240 Query 157999 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGATAGCA 158058 | || |||| | |||| ||| ||| | ||||| || || || || |||| || | Sbjct 179241 CTTGAGTCTTTGCTTAATTTCCAGACGGTTATCACTGATCTTACTGGTTTACCTATGTCG 179300 Query 158059 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 || || || | | ||||||| || || || || ||||||||| Sbjct 179301 AATGCGTCGTTGCTCGATGAAGGTACCGCGGCTGCGGAAGCAATG 179345 >seq146 Length=173015 Score = 107 bits (118), Expect = 2e-18 Identities = 148/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 158443 CAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 158502 || ||||||||| | || ||||| ||||| |||||||||||||| ||||| || || || Sbjct 112006 CAGAGGTTTGGTGTACCGATGGGTTACGGTGGTCCTCATGCTGCTTTCTTGGCTACTTCA 111947 Query 158503 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGCGAAG 158560 | |||||||||| | ||| ||||| || ||| | | || ||| || ||| | Sbjct 111946 CAAGAGTATAAGAGGATGATGCCTGGGAGGATTATTGGTGTTAGT--GTTGATTCTTTGG 111889 Query 158561 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAG 158620 | || |||| | | | || | |||||||| || ||||||||| | || || |||| Sbjct 111888 GAAAACAAGCTTTGCGTATGGCTATGCAGACTAGGGAACAGCATATCCGCAGGGATAAAG 111829 Query 158621 CAACCAGTAACATCTGCACAGCACA 158645 | ||||| |||||||| || || || Sbjct 111828 CTACCAGCAACATCTGTACTGCTCA 111804 Score = 100 bits (110), Expect = 3e-16 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 157939 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 157998 ||||||||| ||||||| || |||||||| |||||||||||||| ||||| ||||| Sbjct 112507 GAGAATCCTGGTTGGTATACTCAGTACACTCCTTATCAAGCTGAGATTTCTCAAGGAAGG 112448 Query 157999 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGATAGCA 158058 | || |||| | |||| ||| ||| | ||||| || || || || |||| || | Sbjct 112447 CTTGAGTCTTTGCTTAATTTCCAGACGGTTATCACTGATCTTACTGGTTTACCTATGTCG 112388 Query 158059 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 || || || | | ||||||| || || || || ||||||||| Sbjct 112387 AATGCGTCGTTGCTCGATGAAGGTACCGCGGCTGCGGAAGCAATG 112343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587991027660960