Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq127 118 1e-21 seq477 95.1 1e-14 seq191 91.5 2e-13 >seq127 Length=1358402 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 |||||||| || | ||| | ||||||| || | || | | |||||| ||||||||| Sbjct 1059920 CCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACCA 1059979 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| || || ||| |||||||| | || | |||||| | |||| Sbjct 1059980 TTAGATGTTCCATTTGTGCCACGAATGTAACTTCCGGTTGCACGGATATTATGAGCTGAA 1060039 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| ||||||||||| |||| ||| | ||||||| ||| || || ||||| || Sbjct 1060040 ACACCAATACCACCTGCAGATTTACTTATAACAGCACACTCTTTGAGTGTTTCATATATG 1060099 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || || || ||||||||| |||| Sbjct 1060100 CCCTCAATGCTATCATCTTTCAT 1060122 Score = 89.7 bits (98), Expect = 6e-13 Identities = 139/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 |||||| | || || | || |||||||||||| |||||||| ||| || | ||| | Sbjct 1060277 AGTTCCAGCGTTGAAGAGAGTAGGAGATGCATGAGTAAACCATCTCTGAGACATCAAATG 1060336 Query 48659 ATATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTA 48717 || |||| || | ||||| ||||| | ||| || || || | || ||| | ||| | Sbjct 1060337 GTAAGTTTGGATTGCGGAATCAATATCATCCTTG-TGAATGCCCACAGCTACCCTCATCA 1060395 Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777 ||| | |||||| |||||||||| ||| | | ||| || || |||||| | || | Sbjct 1060396 GCATGTGTTGAGGCCTTTCAACAACTTTTCCTTGGACTTTTAAGAGGTATGATCTCTCAA 1060455 Query 48778 ATGTTTTAAAACCAAA 48793 |||||||| ||||| Sbjct 1060456 GAGTTTTAAATCCAAA 1060471 >seq477 Length=1203188 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/224 (70%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 || |||||||| || | || |||||||||||| | |||||| || || | || | Sbjct 20108 GTCCCTGAATTGAAGAGAGTAGGAGATGCATGAGTGAACCATCGCTGAGACATTAAATGG 20049 Query 48660 TATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTAA 48718 || || | || | ||||| ||||| | ||| || || || | ||| || | ||| | Sbjct 20048 TAAGTATTGATTGCGGAATCAATATCTTCCTTG-TGGATGCCAACAGAAACCCTCATCAG 19990 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||| | |||||| |||||||| | |||| | || ||| || ||||||||| | || | Sbjct 19989 CATGTGTTGAGGCCTTTCAACCACTTTGCCTTGTACTTTTAAGAGATATGATCTCTCAAG 19930 Query 48779 TGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAA 48822 |||||||| ||||| || | ||| ||| ||| ||||| || Sbjct 19929 CGTTTTAAATCCAAAGTAATCATATTCAAAATCGCGATCATAAA 19886 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 |||||||| || | || | ||||||| || | || | | |||||| ||||||||| Sbjct 20439 CCTCCTTGGTCAACGTAACGAGCAGTATCATTGAATACCCGCAGCATTGGAACAATACCA 20380 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| || || || || ||| ||||||||| | || | || || || ||| Sbjct 20379 TTAGATGCTCCGTTTGTGCCACGAATGTAACTTCCAGTGGCACGAATGTTGTGAACTGAT 20320 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| ||||| ||||| ||| ||| | ||||||| ||| | || ||||| ||| Sbjct 20319 ACACCAATACCCCCTGCTGATTTGCTTATAACAGCACACTCTTTCAACGTGTCATAGATT 20260 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || || || |||||||| |||| Sbjct 20259 CCCTCGATGCTATCATCCTTCAT 20237 >seq191 Length=957377 Score = 91.5 bits (100), Expect = 2e-13 Identities = 156/224 (70%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 || |||||||| || | || |||||||||||| | |||||| || || | || | Sbjct 346226 GTCCCTGAATTGAAGAGAGTAGGAGATGCATGAGTGAACCATCGCTGAGACATTAAATGG 346167 Query 48660 TATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTAA 48718 || || | || | ||||| ||||| | ||| || || || | ||| || | ||| | Sbjct 346166 TAAGTATTGATTGCGGAATCAATATCTTCCTTG-TGGATGCCAACAGAAACCCTCATCAG 346108 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||| | |||||| |||||||| | |||| | || ||| || ||||||||| | || | Sbjct 346107 CATGTGTTGAGGCCTTTCAACCACTTTGCCTTGTACTTTTAAGAGATATGATCTCTCAAG 346048 Query 48779 TGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAA 48822 ||||| || ||||| || | ||| ||| ||| ||||| || Sbjct 346047 CGTTTTGAATCCAAAGTAATCATATTCAAAATCGCGATCATAAA 346004 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 |||||||| || | ||| | ||||||| || | || | | |||||| ||||||||| Sbjct 346557 CCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACCCGCAGCATTGGAACAATACCA 346498 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| || || || || ||| ||||||||| | || | || || || ||| Sbjct 346497 TTAGATGCTCCGTTTGTGCCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAACTGAT 346438 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| ||||| ||||| ||| ||| | ||||||| ||| | || ||||| ||| Sbjct 346437 ACACCGATACCCCCTGCTGATTTGCTTATAACAGCACACTCTTTCAACGTGTCATATATT 346378 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || || || |||||||| |||| Sbjct 346377 CCCTCGATGCTATCATCCTTCAT 346355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562051282217040