Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq261 102 2e-16 seq389 87.8 4e-12 >seq261 Length=623751 Score = 102 bits (112), Expect = 2e-16 Identities = 279/416 (67%), Gaps = 16/416 (4%) Strand=Plus/Minus Query 150364 GATTCTTTCTCGTAAAACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGTTGGTAA 150423 ||||||||| | | ||| || || ||| || | | |||| |||||||| |||||||| Sbjct 325758 GATTCTTTCGAGGAGAACAAAGAACAATCCTGTGCTTATTGGAGAACCAGGAGTTGGTAA 325699 Query 150424 AACACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTAT 150483 |||| | ||||| || ||||||||| | || | || || ||||| || || | | Sbjct 325698 AACAGCTGTGGTTGAAGGTTTAGCACAAAGGATTGTGAAAGGAGATGTGCCCAATAGTCT 325639 Query 150484 GAAAGATGTTGAAATTC-TTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATC 150542 | ||||| || ||| |||||||| | ||||||||||| ||| ||| |||| || | Sbjct 325638 TACTGATGT-GAGATTGATTTCTTTGGACATGGGTGCATTAGTTGCCGGTGCTAAATACC 325580 Query 150543 GTGGTGAATTCGAAGAACG--TGTAGACAATTTGCTACAAGAACTAAAAGAACGCGATG- 150599 | || || || |||||| | || | | ||| | ||||| | | ||| || | Sbjct 325579 GAGGAGAGTTTGAAGAAAGATTGAAAGCTGTTT--TGAAAGAAGTTGAGGAAGCTGAAGG 325522 Query 150600 --ATGTTATTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTGGTGCGACTGGCGG 150657 | || ||||| || || ||||| ||||| || | |||||||| ||| | Sbjct 325521 CAAAGTGATTCTCTTTATTGATGAGATCCACTTGGTTCTTGGTGCTGGAAAAACT---GA 325465 Query 150658 CGGTTCTTTGGATATGAGC-AATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCG-T 150715 || || ||||| ||| ||| |||| || || || || | ||| | |||| | Sbjct 325464 AGGGTCGATGGAT-GCAGCTAATCTGTTCAAGCCCATGTTAGCTAGAGGTCAGCTTCGAT 325406 Query 150716 GTCATCGGTGCAACAACCTACGATGAATATCGTAAACACATTGAAAAAGATGCAGC 150771 || || ||||| ||||| || || ||||| ||| | |||| |||||||| || Sbjct 325405 GT-ATTGGTGCTACAACGCTTGAAGAGTATCGGAAATATGTTGAGAAAGATGCTGC 325351 >seq389 Length=646335 Score = 87.8 bits (96), Expect = 4e-12 Identities = 277/417 (66%), Gaps = 18/417 (4%) Strand=Plus/Plus Query 150364 GATTCTTTCTCGTAAAACCAAAAAGAAT--GGTGCGTTAGTTGGTGAACCAGGTGTTGGT 150421 ||||||||| | | ||| || || ||| ||||| ||| |||| ||||| || || ||| Sbjct 605606 GATTCTTTCAAGGAGAACAAAGAACAATCCGGTGC-TTA-TTGGAGAACCTGGAGTCGGT 605663 Query 150422 AAAACACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCT 150481 |||||| | ||||| || ||||||||| | || | || || || || || | | Sbjct 605664 AAAACAGCTGTGGTTGAAGGGTTAGCACAAAGGATTGTGAAAGGAGACGTGCCCAACAGT 605723 Query 150482 ATGAAAGATGTTGAAATTC-TTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTA 150540 | | ||||| || ||| |||||||| | ||||||||||| ||| ||| |||| || Sbjct 605724 CTTACTGATGT-GAGATTGATTTCTTTGGACATGGGTGCATTAGTTGCCGGTGCTAAATA 605782 Query 150541 TCGTGGTGAATTCGAAGAACG--TGTAGACAATTTGCTACAAGAACTAAAAGAACGCGAT 150598 || || || || |||||| | || | | ||| | ||||| | | ||| || Sbjct 605783 CCGAGGGGAGTTTGAAGAAAGATTGAAAGCTGTTT--TGAAAGAAGTTGAGGAAGCTGAA 605840 Query 150599 G---ATGTTATTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTGGTGCGACTGGC 150655 | | || ||||| || || ||||| ||||| || | |||||||| ||| Sbjct 605841 GGCAAAGTGATTCTCTTTATAGATGAGATCCACTTGGTTCTTGGTGCTGGAAAAACT--- 605897 Query 150656 GGCGGTTCTTTGGATATGAGC-AATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCG 150714 | || || ||||| ||| ||| |||| || ||| || || | ||| | |||| Sbjct 605898 GAAGGGTCGATGGAT-GCAGCTAATCTGTTCAAGCCTATGTTAGCTAGAGGTCAGCTTCG 605956 Query 150715 TGTCATCGGTGCAACAACCTACGATGAATATCGTAAACACATTGAAAAAGATGCAGC 150771 ||| ||||| ||||| || || ||| | ||| | |||| |||||||| || Sbjct 605957 ATGCATTGGTGCTACAACGCTTGAAGAGTATAGGAAATATGTTGAGAAAGATGCTGC 606013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147470037132628