Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq279 120 6e-22 >seq279 Length=1218690 Score = 120 bits (132), Expect = 6e-22 Identities = 429/664 (65%), Gaps = 19/664 (3%) Strand=Plus/Minus Query 48040 AAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAG-- 48097 ||||||| |||| |||| ||| || || | ||| ||| ||| ||||| |||| | Sbjct 625222 AAACTCCCTCTCGATCTCCACAGCGTCGCACACGATCGACTTCACGCG---CTCTTCGCT 625166 Query 48098 --GGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTT 48155 | || ||| | ||| | || |||| | || || ||||| | ||| ||||||| Sbjct 625165 AAGCTTCGTTTTG-AGGAGTGTG---TAGATAAGACACGCGAAGTCGCAGTGTAAGCCTT 625110 Query 48156 CGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGA 48215 |||| || ||| || |||| ||||| | |||||||||| || | | || | Sbjct 625109 CGTCTCGAGAGATCAGTTCGTTTGAGAAAGTTAACCCAGGCATGAGTCCTCGTTTCTTAA 625050 Query 48216 GCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGG 48275 ||||||| || | ||| || ||||||||||| || || || ||||| || Sbjct 625049 GCCAGAAGATGGAACAGAAGCTTCCGGAGAAGAAGATACCTTCAACGCAAGCGAAAGCAA 624990 Query 48276 TGAGCCTCTCTCCGAAAGAA-GCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCC 48334 || | || |||| | | | || ||| |||||| | |||||| | || Sbjct 624989 CGATTCGTTCAGCGAAGGTCTGAGATCC-GTC---GATCCATTTCATCGCCCACTGAGCT 624934 Query 48335 TTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTCACCTGCG 48394 |||||| || || || |||||||| || || |||||||| | | | ||| | Sbjct 624933 TTCTTCGCGACACAAGGAATCGTCTCAATCGCACGGAAGAGATGGTCTCTCTCTTTGTTG 624874 Query 48395 TCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCG 48454 || | || ||| ||| || |||||||||||||| | |||||| || ||| Sbjct 624873 TCTTTGATGTAAGTATCGAGAAGAAGACTATACATCTCAGAGTGTATATTCTCAATCGCG 624814 Query 48455 ATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCC 48514 |||||||| |||||||| || | ||||| | || || || || | ||| | Sbjct 624813 ATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACTTGGACATCGGACATGAACCGAGAT 624754 Query 48515 AGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGG 48574 |||||||| || || || || || ||||| ||||| || ||||| ||||| | | Sbjct 624753 GCGAGATTCTCTAGAACGATACCGTCGGAGGCAGCGAAGAAAGCGAGGACGTGTTTGATG 624694 Query 48575 AAATGGCGCTCGTTGTGGGTGAGAGCATT---CCAGCCCTGTACGTCTTTGCCCAGGTCC 48631 || || || ||| || | ||||| || ||| | | ||||| || || Sbjct 624693 AAGTGACGTTCGCCGTCGTTGAGACTGTTCTCCCAATCGCGGTTGTCTTGTGATAGATCT 624634 Query 48632 ACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCCATATGTCCGGA 48691 |||||||| | ||||||||||| || ||||| |||||||| |||| || | || Sbjct 624633 ACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCTTTCTTGTACATCTCCCAGATCTGTGGG 624574 Query 48692 TAGT 48695 |||| Sbjct 624573 TAGT 624570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931437480906240