Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq279 107 4e-18 >seq279 Length=1218690 Score = 107 bits (118), Expect = 4e-18 Identities = 430/660 (65%), Gaps = 33/660 (5%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||||||||||||||||| || || || ||||||||||||||| | ||||| Sbjct 624581 ATCTGGGAGATGTACAAGAAAGCCGAAGCATCCTTCTGGACCGCCGAAGAAGTAGATCTA 624640 Query 25537 GCCAAGGACATGGACGGCTGGTA---CGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 | | |||| || ||| | | ||| | | | ||| | || || |||| Sbjct 624641 TCACAAGACAACCGCGATTGGGAGAACAGTCTCAACGACGGCGAACGTCACTTCATCAAA 624700 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | || ||||| || ||||| || ||||| || |||||||| | Sbjct 624701 CACGTCCTCGCTTTCTTCGCTGCCTCCGACGGTATCGTTCTAGAGAATCTCGCATCTCGG 624760 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTG-TTTCTACGGTTTCCAGATGGCCAT 25712 |||| || || || | |||||| ||| |||||||||||||||||| || || Sbjct 624761 TTCATGTCCGATGTCCAAGTCTCGGAGGCGC-GTGCTTTCTACGGTTTCCAGATCGCGAT 624819 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCT-GATGACGTACATTACAGACGTCG 25771 || ||| | ||||||||| ||||| ||||| ||| || ||||| | |||| | Sbjct 624820 TGAGAATATACACTCTGAGATGTATAGTCTTCTTCTCGAT-ACTTACATCAAAGACAACA 624878 Query 25772 CCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGC 25831 |||||||| | || || |||| || ||| || || | || || ||| || | Sbjct 624879 AAGAGAGAGACCATCTCTTCCGTGCGATTGAGACGATTCCTTGTGTCGCGAAGAAAGCTC 624938 Query 25832 GGTGGGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCC 25890 |||||| ||||| |||||| || | | || || || | || || | || || Sbjct 624939 AGTGGGCGATGAAATGGATCGACGGATCTCAGACCTTCGCT----GAACGAATCGTTGCT 624994 Query 25891 TTTGCTGCTGTGGAGGGCATCTTTTTCAGCGG----TTCGTTTGCGGCCATCTTCTGGCT 25946 || ||| || || || ||||| ||| ||| ||| || ||||||||||||| Sbjct 624995 TTCGCTTGCGTTGAAGGTATCTTCTTCTCCGGAAGCTTCTGTT----CCATCTTCTGGCT 625050 Query 25947 CAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGGGAC 26004 ||| | | | |||| |||||| ||| | ||||| || ||||| || ||| | ||| Sbjct 625051 TAAG-AAACGAGGACTCATGCCTGGG-TTAACTTTCTCAAACGAACTGATCTCTCGAGAC 625108 Query 26005 GAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTC--CACAAAC 26062 || || | ||| | || || || || || |||||| ||| | ||| || || Sbjct 625109 GAAGGCTTACACTGCGACTTCGCGTGTCTTATCTACA-----CAC-TCCTCAAAACGAAG 625162 Query 26063 CTTCTC-AAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTT 26121 ||| | ||||| ||| | ||| | || |||||||||||||||| ||||||| Sbjct 625163 CTTAGCGAAGAGCGCGTGAAGTCGATCGTGTGCGACGCTGTGGAGATCGAGAGGGAGTTT 625222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928749755955840