Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq267 102 7e-17 seq134 98.7 8e-16 seq233 93.3 4e-14 seq384 91.5 1e-13 seq60 91.5 1e-13 seq190 86.0 5e-12 >seq267 Length=1500311 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||||||||| ||||| | || || ||||||||||| ||| ||| ||| Sbjct 618186 ATGCAAATATTTGTGAAAACCCTCACTGGCAAAACCATTACTCTAGAAGTGGAGAGCTCA 618127 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || ||||| || ||| ||||| || ||| | || || || Sbjct 618126 GACACAATAGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCTCCGGACCAG 618067 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||||||||||||||| ||||| ||| | |||||| | || | || ||||| ||| Sbjct 618066 CAGAGACTTATCTTTGCCGGCAAGCAACTCGAAGATGGTCGGACACTTGCGGATTACAAC 618007 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 || || ||||| || || || ||| |||| Sbjct 618006 ATCCAGAAAGAGTCAACACTACACTTGGT 617978 >seq134 Length=106205 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| |||||||| || || || || |||||| || || ||| Sbjct 48231 ATGCAAATCTTTGTGAAAACATTGACAGGGAAGACTATTACCTTGGATGTTGAGAGCTCA 48172 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | ||||| || || ||||||||||| | || ||| || Sbjct 48171 GACACAATTGATAACGTCAAGGCTAAGATTCAGGACAAAGAGGGGATCCCACCAGACCAG 48112 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||||||||||||||| || ||||| | || || | ||| |||| ||||| ||| Sbjct 48111 CAGAGACTTATCTTTGCTGGGAAACAGCTCGAGGACGGTCGGACTTTGGCTGATTACAAC 48052 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||||||| ||||| ||||| ||| |||| Sbjct 48051 ATTCAAAAGGAATCAACTCTCCACTTGGT 48023 >seq233 Length=166549 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| |||||||| || || || || |||||| || || ||| Sbjct 104232 ATGCAAATCTTTGTGAAAACATTGACAGGGAAGACTATTACCTTGGAGGTTGAGAGCTCA 104291 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | ||||| || || ||||||||||| | || || || Sbjct 104292 GACACAATTGATAACGTCAAGGCTAAGATTCAGGACAAAGAGGGGATCCCACCGGACCAG 104351 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 |||||||| |||||||| || ||||| | || ||| | ||| |||| ||||||||| Sbjct 104352 CAGAGACTCATCTTTGCTGGGAAACAGCTTGAGGATGGTCGGACTTTGGCTGATTATAAC 104411 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 || ||||| ||||| ||||| ||| |||| Sbjct 104412 ATCCAAAAGGAATCAACTCTCCACTTGGT 104440 >seq384 Length=798633 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| ||||| || || || | || ||||||||||||||| ||| || |||| Sbjct 646320 ATGCAGATATTCGTCAAGACCCTTACCGGTAAAACCATTACCCTAGAAGTCGAGAGTTCA 646379 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | || || ||| ||||| || ||| | || |||||| Sbjct 646380 GACACAATTGACAATGTTAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCGGATCAA 646439 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 |||||||| ||||| || |||||||| | || ||| | ||| | | ||||| ||| Sbjct 646440 CAGAGACTAATCTTCGCTGGCAAACAGCTTGAGGATGGTCGAACGCTTTCAGATTACAAC 646499 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || |||||||| || || ||| | ||| | || | |||| ||||| Sbjct 646500 ATCCAGAAAGAATCAACCCTTCACCTTGTACTTCGACTGAGAGGTGGGAT 646549 >seq60 Length=318476 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || || || || || |||||||| ||| ||| || |||| Sbjct 56076 ATGCAGATCTTTGTGAAGACGTTGACTGGCAAAACCATCACCCTCGAGGTTGAGAGTTCA 56017 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | ||| || ||| || ||||||||| | || ||||| Sbjct 56016 GACACTATTGACAATGTTAAGGCTAAGATCCAGGATAAAGAGGGAATCCCACCGGATCAG 55957 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 28731 ||||||||||||||||| || |||||||| || ||| || | |||| || || || | Sbjct 55956 CAGAGACTTATCTTTGCCGGTAAACAATTAGAGGATGGTCGCACACTA--GCTGACTACA 55899 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGT 28762 | || || ||||| || ||||| || |||| Sbjct 55898 ATATCCAGAAAGAGTCCACTCTCCATTTGGT 55868 >seq190 Length=891836 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| ||||| || || || | || ||||||||||||||| ||| || |||| Sbjct 381952 ATGCAGATATTCGTCAAGACCCTTACCGGTAAAACCATTACCCTAGAAGTCGAGAGTTCA 382011 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | || || ||| ||||| || ||| | || |||||| Sbjct 382012 GACACAATTGACAATGTTAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCGGATCAA 382071 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 |||||||| ||||| || || ||||| | || || | ||| | | ||||| ||| Sbjct 382072 CAGAGACTAATCTTCGCTGGTAAACAGCTTGAGGAAGGTCGAACGCTTTCAGATTACAAC 382131 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || |||||||| || || ||| | ||| | || || |||| ||||| Sbjct 382132 ATCCAGAAAGAATCAACCCTTCACCTTGTACTTCGACTAAGAGGTGGGAT 382181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425362358692494