Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq6872 102 1e-16 seq353 102 1e-16 >seq6872 Length=15469 Score = 102 bits (112), Expect = 1e-16 Identities = 133/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 102812 ACATCCGAAGTTGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCTAGTTGATCGTCA 102871 ||||| || || || || || | ||||| |||||||| ||||| || | || || ||| Sbjct 14631 ACATCAGAGGTAGGATAAGCGGCACAGGTGAGAACAAACCCTGCATCAATCTGCTCATCA 14690 Query 102872 TCCAGAAAGGATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTA 102931 || || || || || || || |||| || || ||| ||||||||||| | Sbjct 14691 TCAAGGAAACTCTGGTCAGACTGGTCAACAGATCCAGACACAACTTTACCAGCACAGCTC 14750 Query 102932 GAACACGCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCT 102991 ||||| | ||||||||| || || ||||||| ||| | || ||||| ||||||||||| Sbjct 14751 GAACAAGAACCAGCACGGCAAGAGTAAGGCAAATCGATTCCAGCTTCCTCAGCAGCGTCA 14810 Query 102992 AGAA 102995 |||| Sbjct 14811 AGAA 14814 >seq353 Length=447834 Score = 102 bits (112), Expect = 1e-16 Identities = 133/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 102812 ACATCCGAAGTTGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCTAGTTGATCGTCA 102871 ||||| || || || || || | ||||| |||||||| ||||| || | || || ||| Sbjct 267020 ACATCAGAGGTAGGATAAGCGGCACAGGTGAGAACAAACCCTGCATCAATCTGCTCATCA 266961 Query 102872 TCCAGAAAGGATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTA 102931 || || || || || || || |||| || || ||| ||||||||||| | Sbjct 266960 TCAAGGAAACTCTGGTCAGACTGGTCAACAGATCCAGACACAACTTTACCAGCACAGCTC 266901 Query 102932 GAACACGCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCT 102991 ||||| | ||||||||| || || ||||||| ||| | || ||||| ||||||||||| Sbjct 266900 GAACAAGAACCAGCACGGCAAGAGTAAGGCAAATCGATTCCAGCTTCCTCAGCAGCGTCA 266841 Query 102992 AGAA 102995 |||| Sbjct 266840 AGAA 266837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633448775720880