Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq477 84.2 1e-11 >seq477 Length=1203188 Score = 84.2 bits (92), Expect = 1e-11 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 26065 ACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAA 26124 |||||| || || ||||| ||||| || ||||| | ||||| |||||||| || || Sbjct 20455 ACCTTTCCTCTTGCCTCCTCCTTGGTCAACGTAACGAGCAGTATCATTGAATACCCGCAG 20396 Query 26125 CATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCT 26184 ||||||||| | ||| | || ||||||||||| | |||| | ||| || | | Sbjct 20395 CATTGGAACAATACCATTAGATGCTCCGTTTGTGCCACGAATGTAACTTCCAGTGGCACG 20336 Query 26185 AATATCGTGAGCATGA-ATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTG 26243 ||| | |||| | ||| | ||| || || || || |||| ||| | ||||| ||| Sbjct 20335 AATGTTGTGAAC-TGATACACCAATACCCCCTGCTGATTTGCTTATAACAGCACACTCTT 20277 Query 26244 AAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 | || || | ||||| | ||||||||| | ||||| Sbjct 20276 TCAACGTGTCATAGATTCCCTCGATGCTATCATCCTTCAT 20237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253014754989950