Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq180 123 3e-23 seq94 123 3e-23 seq146 104 3e-17 seq22 100 3e-16 >seq180 Length=4117863 Score = 123 bits (136), Expect = 3e-23 Identities = 158/213 (74%), Gaps = 16/213 (8%) Strand=Plus/Plus Query 139315 CTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTT 139374 |||| || || |||||||| || || |||||||| || ||||||||||| |||||||| | Sbjct 2980820 CTTGAGCAGTACAGATGTTGCTAGTGGCTTTGTCCCTCCTAATATGCTGTTCTCTAGTCT 2980879 Query 139375 GTAGTGCTAATCTGTATGCAG-GATTGCCTTCGCTG-----TC--CACTGACTGACCTAC 139426 | | || | || |||| | |||| ||| ||| || |||| || ||| | Sbjct 2980880 GCATAGCCA-----TACGCAGAGCTTGCTTTC-CTGAAGAATCAACACTAAC--ACCGAT 2980931 Query 139427 AATTCTGCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGG 139486 ||| || || || ||| |||||||||||| | || || || ||||| || |||||||| Sbjct 2980932 AATCCTCCCTGGCATCATTCTCTTATACTCTTGTGAAGTAGCCAAGAAAGCGGCATGAGG 2980991 Query 139487 ACCTCCGTATCCCATAGGAATACCAAACCTTTG 139519 ||| || || ||||| |||| |||||||||||| Sbjct 2980992 ACCACCATAACCCATGGGAACACCAAACCTTTG 2981024 Score = 102 bits (112), Expect = 9e-17 Identities = 88/109 (81%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 138161 AAATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATG 138220 |||||||| | |||||| |||||||| ||||| | |||||||| ||||||||||| Sbjct 2978967 AAATGGTGCCAAATGTTTCTTCACACCAATGGGACCCATACCAGGACCACCACCTCCATG 2979026 Query 138221 TGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCA 138269 ||||||||||| ||||| || | ||| |||||||| ||||| || ||| Sbjct 2979027 AGGAATACAGAAGGTCTTGTGGAGATTGAGATGACACACATCGGCTCCA 2979075 Score = 98.7 bits (108), Expect = 1e-15 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 ||| ||||| || || ||||| ||||||| | || || ||||| | || || | || Sbjct 2981361 CATAGCCTCGGCAGCCGCAGTCCCTTCATCGAGGAGCGAAGCGTTCGACATGGGAAGCCC 2981420 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 || || || ||||||| ||| ||| |||||| | | ||| | | |||||||| || Sbjct 2981421 CGTGAGGTCGGTGATGACCGTCTGGAAATTGAGCAGCGATTCGAGACGACCCTGAGAGAT 2981480 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTTTCG 140035 |||||||||||| |||||||| ||||||||| || ||||| | || ||| || Sbjct 2981481 CTCAGCTTGATAAGGAGTGTACTGAGTGTACCAAGCTGGGTTCTCCATAATGTTACG 2981537 >seq94 Length=1152725 Score = 123 bits (136), Expect = 3e-23 Identities = 158/213 (74%), Gaps = 16/213 (8%) Strand=Plus/Plus Query 139315 CTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTT 139374 |||| || || |||||||| || || |||||||| || ||||||||||| |||||||| | Sbjct 978308 CTTGAGCAGTACAGATGTTGCTAGTGGCTTTGTCCCTCCTAATATGCTGTTCTCTAGTCT 978367 Query 139375 GTAGTGCTAATCTGTATGCAG-GATTGCCTTCGCTG-----TC--CACTGACTGACCTAC 139426 | | || | || |||| | |||| ||| ||| || |||| || ||| | Sbjct 978368 GCATAGCCA-----TACGCAGAGCTTGCTTTC-CTGAAGAATCAACACTAAC--ACCGAT 978419 Query 139427 AATTCTGCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGG 139486 ||| || || || ||| |||||||||||| | || || || ||||| || |||||||| Sbjct 978420 AATCCTCCCTGGCATCATTCTCTTATACTCTTGTGAAGTAGCCAAGAACGCGGCATGAGG 978479 Query 139487 ACCTCCGTATCCCATAGGAATACCAAACCTTTG 139519 ||| || || ||||| |||| |||||||||||| Sbjct 978480 ACCACCATAACCCATGGGAACACCAAACCTTTG 978512 Score = 104 bits (114), Expect = 3e-17 Identities = 129/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 ||| ||||| || || ||||| ||||||| | || || ||||| | || || | || Sbjct 978849 CATAGCCTCCGCAGCCGCAGTCCCTTCATCGAGGAGGGAAGCGTTCGACATGGGAAGCCC 978908 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 || || || ||||||| ||||||| |||||| | | ||| | | |||||||| || Sbjct 978909 AGTGAGGTCGGTGATGACCGTTTGGAAATTGAGCAGCGATTCGAGACGACCCTGAGAGAT 978968 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTTTCG 140035 |||||||||||| |||||||| ||||||||| || ||||| | || ||| || Sbjct 978969 CTCAGCTTGATAAGGAGTGTACTGAGTGTACCAAGCTGGGTTCTCCATAATGTTACG 979025 Score = 98.7 bits (108), Expect = 1e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 138161 AAATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATG 138220 |||||||| | ||||| |||||||| ||||| | |||||||| ||||||||||| Sbjct 976454 AAATGGTGCCAAGTGTTTCTTCACACCAATGGGACCCATACCAGGACCACCACCTCCATG 976513 Query 138221 TGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCA 138269 ||||||||||| ||||| || | ||| |||||||| ||||| || ||| Sbjct 976514 AGGAATACAGAAGGTCTTGTGGAGATTGAGATGACACACATCGGCTCCA 976562 >seq146 Length=173015 Score = 104 bits (114), Expect = 3e-17 Identities = 122/165 (74%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 |||||| || || || || || ||||||| | | || || || | || ||||| || Sbjct 112343 CATTGCTTCCGCAGCCGCGGTACCTTCATCGAGCAACGACGCATTCGACATAGGTAAACC 112402 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 ||||| || ||||| | ||| ||| |||| | |||| || | ||||| ||||| || Sbjct 112403 AGTAAGATCAGTGATAACCGTCTGGAAATTAAGCAAAGACTCAAGCCTTCCTTGAGAAAT 112462 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTC 140023 |||||||||||| |||||||| || ||||||| ||||||||| Sbjct 112463 CTCAGCTTGATAAGGAGTGTACTGAGTATACCAACCAGGATTCTC 112507 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/227 (70%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 139317 TGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGT 139376 || || || |||||||| ||||| ||||| || || | |||||||| || ||||| || Sbjct 111804 TGAGCAGTACAGATGTTGCTGGTAGCTTTATCCCTGCGGATATGCTGTTCCCTAGTCTGC 111863 Query 139377 AGTGCTAATCTGTATGCAGGATTGCCTTCGCTGTC--CACTGACTGACCTACAATTCTGC 139434 | || | | | || | || || || |||| || ||| | ||| || | Sbjct 111864 ATAGCCATACGCAAAGCTTGTTTTCCCAAAGAATCAACACTAAC--ACCAATAATCCTCC 111921 Query 139435 CAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGT 139494 |||| ||| | |||||||||| | || || || ||||| |||||||||||||| |||| Sbjct 111922 CAGGCATCATCCTCTTATACTCTTGTGAAGTAGCCAAGAAAGCAGCATGAGGACCACCGT 111981 Query 139495 ATCCCATAGGAATACCAAACCTTTGCATACTA-CCTACAGCAATATC 139540 | ||||| || | ||||||||| || | | | || ||| ||||||| Sbjct 111982 AACCCATCGGTACACCAAACCTCTG-AGCCGATCCAACAACAATATC 112027 >seq22 Length=1040427 Score = 100 bits (110), Expect = 3e-16 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 |||||| || || || || || ||||||| | | || || || | || ||||| || Sbjct 179345 CATTGCTTCCGCAGCCGCGGTACCTTCATCGAGCAACGACGCATTCGACATAGGTAAACC 179286 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 ||||| || ||||| | ||| ||| |||| | |||| || | ||||| ||||| || Sbjct 179285 AGTAAGATCAGTGATAACCGTCTGGAAATTAAGCAAAGACTCAAGCCTTCCTTGAGAAAT 179226 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTC 140023 |||||||||||| ||||| || || ||||||| ||||||||| Sbjct 179225 CTCAGCTTGATAAGGAGTATACTGAGTATACCAACCAGGATTCTC 179181 Score = 100 bits (110), Expect = 3e-16 Identities = 161/227 (71%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 139317 TGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGT 139376 || || || |||||||| ||||| |||||||| || | ||||| || |||||||| || Sbjct 179884 TGAGCAGTACAGATGTTGCTGGTAGCTTTGTCCCTGCGGATATGTTGTTCTCTAGTCTGC 179825 Query 139377 AGTGCTAATCTGTATGCAGGATTGCCTTCGCTGTC--CACTGACTGACCTACAATTCTGC 139434 | || | | | || | || || || |||| || ||| | ||| || | Sbjct 179824 ATAGCCATACGCAAAGCTTGTTTTCCCAAAGAATCAACACTAAC--ACCAATAATCCTCC 179767 Query 139435 CAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGT 139494 |||| ||| | |||||||||| | || || || ||||| |||||||||||||| |||| Sbjct 179766 CAGGCATCATCCTCTTATACTCTTGTGAAGTAGCCAAGAAAGCAGCATGAGGACCACCGT 179707 Query 139495 ATCCCATAGGAATACCAAACCTTTGCATACTA-CCTACAGCAATATC 139540 | ||||| || | ||||||||| || | | | || ||| ||||||| Sbjct 179706 AACCCATCGGTACACCAAACCTCTG-AGCCGATCCAACAACAATATC 179661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578939153988720