Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq77 123 3e-23 seq55 116 5e-21 >seq77 Length=993252 Score = 123 bits (136), Expect = 3e-23 Identities = 182/258 (71%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 46986 GCGGGAAGAACATGCGAACTTTCTAGGTCAAAATTATCATTTGGACCATATAGGTTTGTA 47045 || ||||| ||||| ||| | || ||| ||||| |||| |||||| || || || || Sbjct 482740 GCAGGAAGCACATGGGAATTCTCCGGGTGGAAATTGTCATGTGGACCGTAGAGATTGGTG 482681 Query 47046 GGCATCAAAGAGATAGCATTAAATCCATACTGCTGATGGTATGCCTGACACATCTTGATA 47105 ||||| ||||| |||| || || ||| | ||| || ||||||||||| || Sbjct 482680 GGCATACCGGAGATGGCATCCCATTGATGCTGAAGCCTGTAAGCTTGACACATCTTAATC 482621 Query 47106 CCAGCAATCTTTGCAATAGCATAAGAATCATTACTAGGTTCAAGAGGACCACTCATTAGA 47165 || |||||||| ||||| || || | || ||| | |||||||| |||||| | | ||| Sbjct 482620 CCTGCAATCTTGGCAATGGCGTACCACTCGTTAGTCGGTTCAAGCGGACCAGTGAGAAGA 482561 Query 47166 TATTCTTCCCTAATAGGTTGTTCACATAATTTTGGATAAATGCAGGAAGAACCAAGAAAT 47225 ||| ||| ||||| | ||||| || |||||||| || || || || || Sbjct 482560 GCGGATTCTGGAATCGGTTGAGGAGCGAATTTGGGGTAAATGCAAGATGAGCCGAGGAAG 482501 Query 47226 AAAAGTTTCTTAACACCA 47243 | ||||||||| |||||| Sbjct 482500 AGAAGTTTCTTCACACCA 482483 >seq55 Length=743138 Score = 116 bits (128), Expect = 5e-21 Identities = 180/257 (70%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 46986 GCGGGAAGAACATGCGAACTTTCTAGGTCAAAATTATCATTTGGACCATATAGGTTTGTA 47045 || || || ||||| ||| | || ||| ||||| ||||||||||| || || || || Sbjct 341531 GCAGGCAGCACATGGGAATTCTCGGGGTGGAAATTGTCATTTGGACCGTAGAGATTGGTG 341590 Query 47046 GGCATCAAAGAGATAGCATTAAATCCATACTGCTGATGGTATGCCTGACACATCTTGATA 47105 ||||| ||||| |||| || || ||| | ||| || ||||||||||| || Sbjct 341591 GGCATACCGGAGATGGCATCCCATTGATGCTGAAGCCTGTAAGCTTGACACATCTTAATC 341650 Query 47106 CCAGCAATCTTTGCAATAGCATAAGAATCATTACTAGGTTCAAGAGGACCACTCATTAGA 47165 || |||||||| ||||| || || | || ||| | |||||||| |||||| | | ||| Sbjct 341651 CCTGCAATCTTGGCAATGGCGTACCACTCGTTAGTCGGTTCAAGCGGACCAGTGAGAAGA 341710 Query 47166 TATTCTTCCCTAATAGGTTGTTCACATAATTTTGGATAAATGCAGGAAGAACCAAGAAAT 47225 ||| ||| ||||| | ||||| || |||||||| || || || || || Sbjct 341711 GCGGATTCAGGAATCGGTTGAGGAGCGAATTTGGGGTAAATGCAAGATGAGCCGAGGAAG 341770 Query 47226 AAAAGTTTCTTAACACC 47242 | |||||||| ||||| Sbjct 341771 AGGAGTTTCTTCACACC 341787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665426303285520