Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq464 149 7e-31 seq358 149 7e-31 seq475 140 4e-28 seq299 131 2e-25 seq120 113 5e-20 seq149 104 3e-17 seq338 102 1e-16 seq279 98.7 1e-15 seq339 96.9 4e-15 seq314 95.1 1e-14 >seq464 Length=218172 Score = 149 bits (164), Expect = 7e-31 Identities = 282/414 (68%), Gaps = 6/414 (1%) Strand=Plus/Minus Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296 ||||| ||||| ||| |||||||||||| || |||||||||||||||| ||| Sbjct 74934 GTGGAGTTTCTGAAGAAACCCGAGAGATTCACTGCGGTTGGTGCCAAGATCCCCAAAGGT 74875 Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356 | || || ||| || ||||| || || ||||| | || |||||| || ||| Sbjct 74874 GTTCTCCTGATTGGTCCTCCTGGTACCGGGAAAACCCTTTTGGCAAAAGCCATTGCTGGT 74815 Query 175357 GAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGT 175416 ||| | ||| || ||| || ||||| | | ||||| ||||||||||| ||| Sbjct 74814 GAAGCTGGTGTGCCTTTCTTCTCCATCTCTGGTTCTGAGTTTGTTGAGATGTTTGTCGGT 74755 Query 175417 GTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATT 175476 || |||||| ||| || || ||||| || | | ||| || ||| || || ||| Sbjct 74754 GTCGGTGCCTCAAGAGTCCGTGATCTTTTCAAGAAAGCCAAGGAGAATGCTCCTTGCATT 74695 Query 175477 GTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCA 175533 ||||| | ||||| || ||||| || |||| |||| | | | || |||| | Sbjct 74694 GTCTTTGTAGATGAAATAGATGCTGTCGGCAGGCAAAGAGGGACCGGAATTGGT---GGA 74638 Query 175534 GCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGAC 175593 | ||||| || |||||||| || | ||||| || || || ||||||||||| ||||| Sbjct 74637 GGTAATGATGAAAGAGAACAGACCCTCAATCAGCTCCTAACTGAGATGGATGGTTTTGAA 74578 Query 175594 AATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGAT 175647 | | ||||| || | || |||| || || ||| | | || || |||||| Sbjct 74577 GGTAACACTGGTGTTATCGTAGTTGCTGCAACCAATAGAGCAGACATTCTTGAT 74524 >seq358 Length=878959 Score = 149 bits (164), Expect = 7e-31 Identities = 282/414 (68%), Gaps = 6/414 (1%) Strand=Plus/Plus Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296 ||||| ||||| ||| |||||||||| | || ||||||||||||||| ||| Sbjct 820744 GTGGAGTTTCTGAAGAAACCCGAGAGGTTCACTGCGGTTGGTGCCAAGATCCCGAAAGGT 820803 Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356 | || || ||| || ||||| || || ||||| | || |||||| || ||| Sbjct 820804 GTTCTCCTGATTGGTCCTCCTGGTACCGGGAAAACCCTTTTGGCAAAAGCCATTGCTGGT 820863 Query 175357 GAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGT 175416 ||| | |||||| ||| || ||||| | | ||||| ||||||||||| ||| Sbjct 820864 GAAGCTGGTGTCCCTTTCTTCTCCATCTCTGGTTCTGAGTTTGTTGAGATGTTTGTCGGT 820923 Query 175417 GTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATT 175476 || |||||| ||| || || ||||| || | | ||| || ||| || || ||| Sbjct 820924 GTCGGTGCCTCAAGAGTCCGTGATCTTTTCAAGAAAGCCAAGGAGAATGCTCCTTGCATT 820983 Query 175477 GTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCA 175533 ||||| | ||||| || ||||| || || | |||| | | |||| |||| | Sbjct 820984 GTCTTTGTAGATGAAATAGATGCTGTCGGTAGGCAAAGAGGGACTGGAATTGGT---GGA 821040 Query 175534 GCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGAC 175593 | ||||| ||||||||||| || | ||||| || || || ||||||||||| ||||| Sbjct 821041 GGTAATGATGAGAGAGAACAGACCCTCAATCAGCTCCTAACTGAGATGGATGGTTTTGAA 821100 Query 175594 AATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGAT 175647 | | ||||| || | || |||| || || ||| | | || || |||||| Sbjct 821101 GGTAACACTGGTGTTATCGTAGTTGCTGCAACCAATAGAGCAGACATTCTTGAT 821154 >seq475 Length=165231 Score = 140 bits (154), Expect = 4e-28 Identities = 202/281 (72%), Gaps = 8/281 (3%) Strand=Plus/Plus Query 175314 GCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATT 175373 ||| |||||||| ||||||||| | ||| | || | || || ||| || || || || Sbjct 5993 GCCTGGTACGGGTAAGACCCTCTTGGCCAGGGCGGTGGCTGGGGAAGCAGGAGTACCGTT 6052 Query 175374 CATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433 | || ||| | ||| || | ||||||||| | || || ||||||||||| || || Sbjct 6053 CTTCTCTTGCGCCGCCTCAGAGTTTGTGGAGCTTTTCGTGGGTGTGGGTGCATCTAGAGT 6112 Query 175434 TCGCGATCTCTTTGAAATCGCC--CGCGAAAATCAACCATGTATTGTCTTCATTGATGAG 175491 | | ||| | || || | ||| ||||| | || |||||||| |||||||||||| Sbjct 6113 TAGGGATTTGTTCGAGAAGGCCAAGTCGAAAGCC--CCTTGTATTGTATTCATTGATGAG 6170 Query 175492 ATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAG 175549 ||||| || ||||| | ||| | | ||||| ||| | | || |||||| ||||||| Sbjct 6171 ATTGACGCTGTGGGGAGGCAGAGAGGAGCTGGGATGGGAGG--AGGAAATGATGAGAGAG 6228 Query 175550 AACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 |||| || |||||||| | | || ||||||||||| ||| Sbjct 6229 AACAGACCATTAATCAGTTGTTGACAGAGATGGATGGATTT 6269 >seq299 Length=980704 Score = 131 bits (144), Expect = 2e-25 Identities = 200/281 (71%), Gaps = 8/281 (3%) Strand=Plus/Plus Query 175314 GCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATT 175373 ||| |||||||| ||||||||| | ||| | || | || || ||| || || || || Sbjct 812771 GCCTGGTACGGGTAAGACCCTCTTGGCCAGGGCGGTGGCTGGGGAAGCAGGAGTACCGTT 812830 Query 175374 CATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433 | || ||| | ||| || | ||||||||| | || || ||||||||||| || || Sbjct 812831 CTTCTCTTGCGCCGCCTCAGAGTTTGTGGAGCTTTTCGTGGGTGTGGGTGCATCTAGAGT 812890 Query 175434 TCGCGATCTCTTTGAAATCGC--CCGCGAAAATCAACCATGTATTGTCTTCATTGATGAG 175491 | | ||| | || || | || ||||| | || ||||| || |||||||||||| Sbjct 812891 TAGGGATTTGTTCGAGAAGGCTAAGTCGAAAGCC--CCTTGTATCGTTTTCATTGATGAG 812948 Query 175492 ATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAG 175549 ||||| || ||||| | ||| | | ||||| ||| | | || |||||| ||||||| Sbjct 812949 ATTGACGCTGTGGGGAGGCAGAGAGGAGCTGGGATGGGAGG--AGGAAATGATGAGAGAG 813006 Query 175550 AACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 |||| || |||||||| | | || ||||||||||| ||| Sbjct 813007 AACAGACCATTAATCAGTTGTTGACAGAGATGGATGGATTT 813047 >seq120 Length=809644 Score = 113 bits (124), Expect = 5e-20 Identities = 293/445 (66%), Gaps = 4/445 (1%) Strand=Plus/Plus Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296 ||||| ||||| ||| | || ||||| | | || ||||||| ||||||| ||| Sbjct 3108 GTGGAGTTTCTGAAGAAGCCTGAGAGGTTTACTGCGGTTGGTGCCCGGATCCCCAAAGGT 3167 Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356 | || || ||| || ||||| || || ||||| | || ||| || || ||| Sbjct 3168 GTTCTCCTTATAGGTCCTCCTGGTACTGGTAAAACCCTGTTGGCAAAAGCTATTGCTGGT 3227 Query 175357 GAATCAAATGTCCCATTCAT--CCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTG 175414 ||| | ||| || ||| | ||| ||| | | | ||||| ||||||||||| | Sbjct 3228 GAAGCTGGTGTACCCTTCTTTTCCAT--CTCGGGTTCTGAGTTTGTTGAGATGTTTGTCG 3285 Query 175415 GTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTA 175474 |||| ||||| |||||| || ||||| || ||| || || ||| || || | Sbjct 3286 GTGTTGGTGCATCAAGGGTCCGTGATCTTTTCAAAAAAGCAAAAGAGAATGCTCCGTGCA 3345 Query 175475 TTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAG 175534 | || || | ||||| || ||||| || || | |||| | | ||||| | || Sbjct 3346 TAGTTTTTGTGGATGAAATAGATGCTGTTGGTAGGCAAAGAGGAACTGGTATTGGTGGAG 3405 Query 175535 CAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACA 175594 ||||| || |||||||| || ||||||| || || || ||||||||||| ||||| Sbjct 3406 GTAATGATGAAAGAGAACAGACCCTTAATCAGCTTCTGACTGAGATGGATGGTTTTGAGG 3465 Query 175595 ATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCC 175654 | | ||||| || | || |||| || || || | | || || ||||| ||| Sbjct 3466 GTAACACTGGTGTTATCGTAGTTGCTGCAACCAACAGAGCAGACATTCTTGACTCCGCTT 3525 Query 175655 TCCTTCGCCCGGGTCGTTTTGATCG 175679 | || | || || || ||||| || Sbjct 3526 TGCTAAGACCAGGGCGGTTTGACCG 3550 >seq149 Length=1704810 Score = 104 bits (114), Expect = 3e-17 Identities = 274/415 (66%), Gaps = 10/415 (2%) Strand=Plus/Minus Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296 ||||| ||||| ||| | || ||||| | | || ||| ||| ||||||| ||| Sbjct 889909 GTGGAGTTTCTGAAGAAGCCTGAGAGGTTTACTGCGGTTGGAGCCCGGATCCCCAAAGGT 889850 Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356 | || || ||| || ||||| || || ||||| | || ||| || || ||| Sbjct 889849 GTTCTCCTTATAGGTCCTCCTGGTACTGGTAAAACCCTGTTGGCAAAAGCTATTGCTGGT 889790 Query 175357 GAATCAAATGTCCCATTCAT--CCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTG 175414 ||| | ||| || ||| | ||| ||| | | | ||||| ||||||||||||| Sbjct 889789 GAAGCTGGTGTACCCTTCTTTTCCAT--CTCGGGTTCTGAGTTTGTTGAGATGTTTGTTG 889732 Query 175415 GTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTA 175474 |||| ||||| |||||| || ||||| || ||| || || ||| || || | Sbjct 889731 GTGTTGGTGCATCAAGGGTCCGTGATCTTTTCAAAAAAGCAAAAGAGAATGCTCCGTGCA 889672 Query 175475 TTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGC 175531 | || || | ||||| || ||||| || || | |||| | | | || |||| Sbjct 889671 TAGTTTTTGTGGATGAAATAGATGCTGTTGGTAGGCAAAGAGGAACCGGAATTGGT---G 889615 Query 175532 CAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTG 175591 || ||||| || |||||||| || ||||||| || || || ||||||||||| |||| Sbjct 889614 GAGGTAATGATGAAAGAGAACAGACCCTTAATCAGCTTCTGACTGAGATGGATGGTTTTG 889555 Query 175592 ACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 | | | ||||| || | || |||| || || || | | || || ||||| Sbjct 889554 AGGGTAACACTGGTGTTATTGTAGTTGCTGCAACCAACAGAGCAGACATTCTTGA 889500 >seq338 Length=692754 Score = 102 bits (112), Expect = 1e-16 Identities = 232/342 (68%), Gaps = 14/342 (4%) Strand=Plus/Minus Query 177538 CCAACCTCTTTGAAGCACATTTCAACAAACTGCCTC-ACAGAGTGTGTCTCCCCCGTCGC 177596 ||||| | ||||| ||| || | ||||| |||| |||| ||||| ||| | || || Sbjct 665941 CCAACATACTTGAAAGACACCTCCAGAAACT-CCTCGACAGTGTGTGATTCCTCAGTTGC 665883 Query 177597 GACAACATATTCATCAGCCTCTTCTTGTTGAAGCATGAGCCACATGGCTTCAACATAGTC 177656 || || || ||||| | | || || || ||||| |||||||| || || || ||||| Sbjct 665882 CACGACGTAGTCATCTGGTTTCTCCTGCTGCAGCATCAGCCACATTGCCTCGACGTAGTC 665823 Query 177657 -CTTGGCATGACCCCAGTCTCTGGCAGCGTTGAGGTTACCGAGTTCAAGGAACTCTCTCT 177715 | || | | ||||||||||| | ||| | | || ||||| | || || ||| Sbjct 665822 TCCTGCGAAG-CCCCAGTCTCTTGAAGCCTGTATATTTCCGAGG---AAGAGCTTCGTCT 665767 Query 177716 CACCTTTCACAATTTGTTTGACGCCATC-----AGTAATCTTCTTTGTGACAAAGTCGGC 177770 | || | ||| | ||| ||| || ||| || || |||| | Sbjct 665766 G--CAATCCGACCTTGATCCTTCCCAAAGCCCGAGTGATTTTCCGAGTAACGAAGTTCTC 665709 Query 177771 ACCTCGTCTCGGTGATTCGTGGTTGAAGAGGATTCCGGAGCAGGCATACATACCATAGGA 177830 ||| || | ||||||||||||||||||||||| ||| |||||| |||| |||||||| Sbjct 665708 ACCCCGGCGTGGTGATTCGTGGTTGAAGAGGATCCCGTTGCAGGCGTACAGACCATAGGC 665649 Query 177831 TTCTCGGTAATTTTTGACGAGCCAGTGAGCGGCCAATTTGGA 177872 |||||||| || | | |||||||||||| ||||||| Sbjct 665648 CTCTCGGTAGTTGACGGTGTACCAGTGAGCGGCGCATTTGGA 665607 >seq279 Length=1218690 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/200 (71%), Gaps = 3/200 (2%) Strand=Plus/Plus Query 65011 CCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCTCC 65070 || ||| | | |||||| || | ||||| ||||||||| | ||| | |||| || Sbjct 624917 CCTTGTGTCGCGAAGAAAGCTCAGTGGGCGATGAAATGGATCGACGGA---TCTCAGACC 624973 Query 65071 TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTC 65130 ||||| || || | |||| || || || || || ||||||||||||||||| ||| Sbjct 624974 TTCGCTGAACGAATCGTTGCTTTCGCTTGCGTTGAAGGTATCTTCTTCTCCGGAAGCTTC 625033 Query 65131 TGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAA 65190 || | || | ||| | ||||| || || |||||||| || || |||||||| ||| Sbjct 625034 TGTTCCATCTTCTGGCTTAAGAAACGAGGACTCATGCCTGGGTTAACTTTCTCAAACGAA 625093 Query 65191 CTTATTTCCCGAGATGAGGG 65210 || || || ||||| || || Sbjct 625094 CTGATCTCTCGAGACGAAGG 625113 >seq339 Length=148954 Score = 96.9 bits (106), Expect = 4e-15 Identities = 135/189 (71%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 65022 GAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCTCCTTCGCCGAGCG 65081 |||||| || | ||||| ||||||||| | ||| | |||| ||||||| || || Sbjct 22578 GAAGAAAGCTCAGTGGGCGATGAAATGGATCGACGGA---TCTCAGACCTTCGCTGAACG 22634 Query 65082 CCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTA 65141 | |||| || || ||||| || ||||||||||||||||| ||||| | || | Sbjct 22635 AATCGTTGCTTTCGCTTGTGTTGAAGGTATCTTCTTCTCCGGAAGCTTCTGTTCCATCTT 22694 Query 65142 TTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCG 65201 ||| | ||||| || || |||||||| || || |||||||| ||| | || || || Sbjct 22695 CTGGCTTAAGAAACGAGGACTCATGCCTGGGTTAACTTTCTCAAACGAATTGATCTCTCG 22754 Query 65202 AGATGAGGG 65210 ||| || || Sbjct 22755 AGACGAAGG 22763 >seq314 Length=234485 Score = 95.1 bits (104), Expect = 1e-14 Identities = 250/375 (67%), Gaps = 14/375 (4%) Strand=Plus/Minus Query 177538 CCAACCTCTTTGAAGCACATTTCAACAAACTGCCTC-ACAGAGTGTGTCTCCCCCGTCGC 177596 ||||| | ||||| ||| || | ||||| |||| |||| ||||| ||| | || || Sbjct 111578 CCAACGTACTTGAAAGACACCTCCAGAAACT-CCTCGACAGTGTGTGATTCCTCAGTTGC 111520 Query 177597 GACAACATATTCATCAGCCTCTTCTTGTTGAAGCATGAGCCACATGGCTTCAACATAGTC 177656 || || || ||||| | | || || || ||||| |||||||| || || || ||||| Sbjct 111519 CACGACGTAGTCATCTGGTTTCTCCTGCTGCAGCATCAGCCACATTGCCTCGACGTAGTC 111460 Query 177657 -CTTGGCATGACCCCAGTCTCTGGCAGCGTTGAGGTTACCGAGTTCAAGGAACTCTCTCT 177715 | || | | ||||||||||| | ||| | | || || || | || || ||| Sbjct 111459 TCCTGCGAAG-CCCCAGTCTCTTGAAGCCTGTATATTTCCAAGG---AAGAGCTTCGTCT 111404 Query 177716 CACCTTTCACAATTTGTTTGACGCCATC-----AGTAATCTTCTTTGTGACAAAGTCGGC 177770 | || | ||| | ||| ||| || ||| || || |||| | Sbjct 111403 G--CAATCCGACCTTGATCCTTCCCAAAGCCCGAGTGATTTTCCGAGTAACGAAGTTCTC 111346 Query 177771 ACCTCGTCTCGGTGATTCGTGGTTGAAGAGGATTCCGGAGCAGGCATACATACCATAGGA 177830 ||| || | ||||| ||||||||||||||||| ||| |||||| |||| |||||||| Sbjct 111345 ACCCCGGCGTGGTGACTCGTGGTTGAAGAGGATCCCGTTGCAGGCGTACAGACCATAGGC 111286 Query 177831 TTCTCGGTAATTTTTGACGAGCCAGTGAGCGGCCAATTTGGAGACGCCATAGACGGATCG 177890 |||||||| || | | |||||||||||| ||||||| | ||||| |||| Sbjct 111285 CTCTCGGTAGTTGACGGTGTACCAGTGAGCGGCGCATTTGGACGCTGCATAGGGAGATCT 111226 Query 177891 TGGGTAGAAGGGTGT 177905 || | || ||||| Sbjct 111225 GGGATGAAACGGTGT 111211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596508556015680