Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq82 96.9 5e-15 seq61 91.5 2e-13 seq233 87.8 3e-12 seq134 87.8 3e-12 seq60 87.8 3e-12 seq190 86.0 9e-12 seq267 84.2 3e-11 >seq82 Length=470516 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | |||||| | ||||| || || || || | || ||||| ||| Sbjct 88328 ATGCAAATTTTCGTGAAAACACTCACTGGTAAGACCATCACTCTTGAGGTCGAGAGCTCT 88269 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || || || || || || || |||||||| ||||| || || Sbjct 88268 GACACCATCGACAATGTTAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCGGACCAG 88209 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | |||||||| ||||| |||||| | | || || | ||||| || Sbjct 88208 CAAAGATTGATCTTCGCCGGTAAACAGCTTGAAGATGGCCGCACCTTGGCCGATTACAAC 88149 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || |||||| | || || ||||| || | | |||||||| ||| Sbjct 88148 ATCCAGAAAGAGTCCACCCTCCATTTGGTTCTCCGTTTAAGAGGTGGT 88101 >seq61 Length=1440766 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | |||||| | ||||| || || || || | || ||||| ||| Sbjct 1073428 ATGCAAATTTTCGTGAAAACACTCACTGGTAAGACCATCACTCTTGAGGTCGAGAGCTCT 1073487 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || || || || || || | |||||||| ||||| || || Sbjct 1073488 GACACCATCGACAATGTTAAGGCAAAGATCCAGGACAGGGAAGGCATTCCTCCGGACCAG 1073547 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | |||||||| ||||| |||||| | | || || | ||||| || Sbjct 1073548 CAAAGATTGATCTTCGCCGGTAAACAGCTTGAAGATGGCCGCACCTTGGCCGATTACAAC 1073607 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || |||||| | || || ||||| || | | |||||||| ||| Sbjct 1073608 ATCCAGAAAGAGTCCACCCTCCATTTGGTTCTCCGTTTAAGAGGTGGT 1073655 >seq233 Length=166549 Score = 87.8 bits (96), Expect = 3e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | |||||| | ||||| || || ||||| | || || || ||| Sbjct 103320 ATGCAAATTTTCGTGAAAACACTTACTGGCAAGACCATTACTCTTGAGGTAGAGAGCTCT 103379 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || || || || || || ||||| || ||||| || || Sbjct 103380 GACACTATCGACAATGTTAAGGCAAAGATTCAGGACAAGGAAGGGATCCCTCCGGATCAG 103439 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | ||||||||| ||||| || ||| | || || | ||||| ||| Sbjct 103440 CAAAGATTGATCTTTGCCGGTAAACAGCTTGAGGATGGACGTACCTTGGCGGATTACAAT 103499 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || || | || || || || || | || |||||||| ||| Sbjct 103500 ATCCAGAAGGAATCAACTCTCCACTTGGTTCTCAGGTTAAGAGGTGGT 103547 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || ||||||||||| ||||| ||||| || || || || ||| Sbjct 103548 ATGCAGATCTTTGTGAAGACATTGACTGGCAAAACCATTACTTTGGAGGTTGAGAGCTCT 103607 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || || ||| ||| || || || || ||||| || ||||| || || Sbjct 103608 GATACTATTGACAATGTTAAAGCTAAGATTCAGGACAAGGAAGGGATTCCTCCGGATCAG 103667 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || | || | ||| ||||||||| | || ||| Sbjct 103668 CAGAGGCTTATCTTTGCTGGTAAGCAGTTAGAGGAT 103703 >seq134 Length=106205 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || ||||||||||| ||||| ||||| || || || || ||| Sbjct 49143 ATGCAGATCTTTGTGAAGACATTGACTGGCAAAACCATTACTTTGGAGGTTGAGAGCTCT 49084 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || || ||| ||| || || || || ||||| || ||||| || || Sbjct 49083 GATACTATTGACAATGTTAAAGCTAAGATTCAGGACAAGGAAGGGATTCCTCCGGATCAG 49024 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || | || | ||| ||||||||| | || ||| Sbjct 49023 CAGAGGCTTATCTTTGCTGGTAAGCAGTTAGAGGAT 48988 >seq60 Length=318476 Score = 87.8 bits (96), Expect = 3e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | |||||| | ||||| || || || || | || || || ||| Sbjct 56304 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTTGAGAGCTCT 56245 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || || || || || || || |||||||| ||||| || || Sbjct 56244 GACACAATCGACAATGTTAAGGCGAAGATCCAGGACAAGGAAGGCATTCCTCCGGATCAG 56185 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | || ||||| ||||| |||||| | || || ||||||| || Sbjct 56184 CAAAGATTGATCTTCGCTGGTAAACAGCTAGAAGATGGTCGTACCTTGGCAGATTACAAC 56125 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || |||||| | || |||||||| || | | ||||||| ||| Sbjct 56124 ATCCAGAAAGAGTCAACCCTTCATTTGGTTCTCCGGCTAAGAGGTGGT 56077 >seq190 Length=891836 Score = 86.0 bits (94), Expect = 9e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || || | || || | || || ||||| || || || ||||| || || Sbjct 382398 AATGCAGATCTTCGTCAAGACCCTTACCGGCAAAACCATAACTTTGGAAGTTGAGAGCTC 382457 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | || |||||||| || || ||||| || ||||| ||| | ||||| || Sbjct 382458 TGACACGATCGATAACGTGAAGGCAAAGATCCAAGACAAGGAAGGGATATCACCAGACCA 382517 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| ||| | || | ||| || || |||||||||||| | | ||| | ||||||| || Sbjct 382518 ACAGAGACTCATCTTTGCAGGCAAACAGCTCGAAGATGGCCGCACTCTTGCAGATTACAA 382577 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGA 156038 || |||||| | || || ||| | ||| | ||| Sbjct 382578 CATCCAGAAAGAGTCAACCCTCCATCTTGTGCTGAGA 382614 >seq267 Length=1500311 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | ||||| | ||||| ||||| ||||| ||||||| || || Sbjct 618186 ATGCAAATATTTGTGAAAACCCTCACTGGCAAAACCATTACTCTAGAAGTGGAGAGCTCA 618127 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || || || || ||||| || ||||| || ||||| || || Sbjct 618126 GACACAATAGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCTCCGGACCAG 618067 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || ||| | || | |||||| ||||| ||||||||| Sbjct 618066 CAGAGACTTATCTTTGCCGGCAAGCAACTCGAAGAT 618031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731797111197600