Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq232 93.3 5e-14 >seq232 Length=632595 Score = 93.3 bits (102), Expect = 5e-14 Identities = 144/203 (71%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 158739 AAGAGGATCAATACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTT 158798 |||| || |||||||| | || ||||| || || ||||||||||| | |||||||| Sbjct 629800 AAGACGACCAATACATATTGGATGCAGCTGAGGAGGCAGGAGTTGACTTGCCTTACTCTT 629859 Query 158799 GTCGTGCTGGTGCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGA 158858 | | || |||||||| || | || || ||| | ||||| || || | |||||||||| Sbjct 629860 GCAGAGCCGGTGCTTGTTCGACTTGCGCGGGTCAGATTGTGTCGGGGAATGTTGATCAGT 629919 Query 158859 GTGATCAGTCGTTCTTAGACGATGATCAGATTGCAGCAGGATT-TGTTCTTACGTGTGTA 158917 ||| ||||| | || ||| || | || || ||| || |||| | || ||||| Sbjct 629920 CGGATGGTTCGTTTCTCGAGGATAGCCACA-TGGAGAAGGGTTATGTTTTGACTTGTGTG 629978 Query 158918 GCATATCCAACATCTGATTGTGT 158940 || || ||| ||||| ||||| Sbjct 629979 GCTTACCCACAGTCTGACTGTGT 630001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548318287589520