Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq6872 125 8e-24 seq353 125 8e-24 seq351 125 8e-24 >seq6872 Length=15469 Score = 125 bits (138), Expect = 8e-24 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 151989 TGTGAAGATGACCAGTACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTAC 152048 ||||| || ||| ||| | | || |||||||||||| ||| | ||| || ||| Sbjct 14833 TGTGACGACGACGTCTACGTTCTTGACGCTGCTGAGGAAGCTGGAATCGATTTGCCTTAC 14774 Query 152049 TCTTGTCGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGAT 152108 ||||| ||||||||| | ||||| ||||||||||| ||||| ||| | ||||| Sbjct 14773 TCTTGCCGTGCTGGTTCTTGTTCGAGCTGTGCTGGTAAAGTTGTGTCTGGATCTGTTGAC 14714 Query 152109 CAGAGTGACCAATCATTCTTGGATGATGACCAGATTGAATCAGGATTCGTGCTGACCTGT 152168 ||| |||||| ||| | |||||||| |||||||| |||| || || || |||||| Sbjct 14713 CAGTCTGACCAGAGTTTCCTTGATGATGAGCAGATTGATGCAGGGTTTGTTCTCACCTGT 14654 Query 152169 GTTGCATATCCAACTTCTGATGTCACC 152195 | || ||||| || |||||||| ||| Sbjct 14653 GCCGCTTATCCTACCTCTGATGTTACC 14627 >seq353 Length=447834 Score = 125 bits (138), Expect = 8e-24 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 151989 TGTGAAGATGACCAGTACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTAC 152048 ||||| || ||| ||| | | || |||||||||||| ||| | ||| || ||| Sbjct 266818 TGTGACGACGACGTCTACGTTCTTGACGCTGCTGAGGAAGCTGGAATCGATTTGCCTTAC 266877 Query 152049 TCTTGTCGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGAT 152108 ||||| ||||||||| | ||||| ||||||||||| ||||| ||| | ||||| Sbjct 266878 TCTTGCCGTGCTGGTTCTTGTTCGAGCTGTGCTGGTAAAGTTGTGTCTGGATCTGTTGAC 266937 Query 152109 CAGAGTGACCAATCATTCTTGGATGATGACCAGATTGAATCAGGATTCGTGCTGACCTGT 152168 ||| |||||| ||| | |||||||| |||||||| |||| || || || |||||| Sbjct 266938 CAGTCTGACCAGAGTTTCCTTGATGATGAGCAGATTGATGCAGGGTTTGTTCTCACCTGT 266997 Query 152169 GTTGCATATCCAACTTCTGATGTCACC 152195 | || ||||| || |||||||| ||| Sbjct 266998 GCCGCTTATCCTACCTCTGATGTTACC 267024 >seq351 Length=837821 Score = 125 bits (138), Expect = 8e-24 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 151989 TGTGAAGATGACCAGTACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTAC 152048 ||||| || ||| ||| | | ||||||||||||||| ||| | ||| || ||| Sbjct 562176 TGTGACGACGACGTCTACGTTCTTGATGCTGCTGAGGAAGCTGGAATCGATTTGCCTTAC 562117 Query 152049 TCTTGTCGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGAT 152108 ||||| ||||||||| | ||||| || |||||||| ||||| ||| | ||||| Sbjct 562116 TCTTGCCGTGCTGGTTCTTGTTCGAGCTGCGCTGGTAAAGTTGTGTCTGGATCTGTTGAC 562057 Query 152109 CAGAGTGACCAATCATTCTTGGATGATGACCAGATTGAATCAGGATTCGTGCTGACCTGT 152168 ||| |||||| ||| | |||||||| |||||||| |||| || || || |||||| Sbjct 562056 CAGTCTGACCAGAGTTTCCTTGATGATGAGCAGATTGATGCAGGGTTTGTTCTCACCTGT 561997 Query 152169 GTTGCATATCCAACTTCTGATGTCACC 152195 | || ||||| || |||||||| ||| Sbjct 561996 GCCGCTTATCCTACCTCTGATGTTACC 561970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549566159887920