Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq279 161 1e-33 seq339 87.8 2e-11 >seq279 Length=1218690 Score = 161 bits (178), Expect = 1e-33 Identities = 220/300 (73%), Gaps = 8/300 (3%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| || ||||| || ||||||||||| ||||| || || | | |||| | |||||| Sbjct 624834 GAGTGTATATTCTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACTTGG 624775 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || ||||||||| || || ||||| ||||| |||||| ||| ||||| Sbjct 624774 ACATCGGACATGAACCGAGATGCGAGATTCTCTAGAACGATACCGTCGGAGGCAGCGAAG 624715 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAG---CGACACCCAGTGG 869809 ||||| |||||||| ||||| ||||| || ||| ||||| |||| | |||| | | Sbjct 624714 AAAGCGAGGACGTGTTTGATGAAGTGACGTTCGCCGTCGTTGAGACTGTTCTCCCAATCG 624655 Query 869810 ACGGTGTC-GGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTT 869868 | |||| | | | || || || || ||||||||||||| || || ||||| || || Sbjct 624654 CGGTTGTCTTGTGAT-AGATCTACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCTTTCTT 624596 Query 869869 GTACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGT-TGGGGTTG 869926 |||||||||||| | || ||||| |||| ||||| | ||| || | || |||||||| Sbjct 624595 GTACATCTCCCAGATCTGTGGGTAGTGGATTGGGAACA-TACAGAATCTGTCTGGGGTTG 624537 Score = 96.9 bits (106), Expect = 4e-14 Identities = 162/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 |||||||| ||| ||||| |||||| || | | || |||||||| || || ||| Sbjct 625113 CCTTCGTCTCGAGAGATCAGTTCGTTTGAGAAAGTTAACCCAGGCATGAGTCCTCGTTTC 625054 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || ||||| ||||||| ||||| || || ||||| ||||| || || ||| || || Sbjct 625053 TTAAGCCAGAAGATGGAACAGAAGCTTCCGGAGAAGAAGATACCTTCAACGCAAGCGAAA 624994 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359 | | || || || || ||||| | ||| || || |||||| ||||||||||| Sbjct 624993 GCAACGATTCGTTCAGCGAAGGTCT-GAGATCC-----GTCGATCCATTTCATCGCCCAC 624940 Query 869360 TCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTC 869412 | || || ||| || | || | ||| || || || || ||||| ||||| Sbjct 624939 TGAGCTTTCTTCGCGACACAAGGAATCGTCTCAATCGCACGGAAGAGATGGTC 624887 >seq339 Length=148954 Score = 87.8 bits (96), Expect = 2e-11 Identities = 160/233 (69%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 |||||||| ||| ||||| |||||| || | | || |||||||| || || ||| Sbjct 22763 CCTTCGTCTCGAGAGATCAATTCGTTTGAGAAAGTTAACCCAGGCATGAGTCCTCGTTTC 22704 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || ||||| ||||||| ||||| || || ||||| ||||| || || || || || Sbjct 22703 TTAAGCCAGAAGATGGAACAGAAGCTTCCGGAGAAGAAGATACCTTCAACACAAGCGAAA 22644 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359 | | || || || || ||||| | ||| || || |||||| ||||||||||| Sbjct 22643 GCAACGATTCGTTCAGCGAAGGTCT-GAGATCC-----GTCGATCCATTTCATCGCCCAC 22590 Query 869360 TCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTC 869412 | || || ||| || | || | ||| || || || || ||||| || || Sbjct 22589 TGAGCTTTCTTCGCGACGCAAGGGATCGTTTCAATCGCACGGAAGAGATGATC 22537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106467418504962