Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq134 104 2e-17 seq233 100 2e-16 seq384 98.7 8e-16 seq190 95.1 1e-14 seq267 93.3 3e-14 seq244 91.5 1e-13 seq411 89.7 4e-13 seq75 84.2 2e-11 seq280 82.4 6e-11 seq240 82.4 6e-11 seq60 82.4 6e-11 >seq134 Length=106205 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || || || || |||||||||||||| | || ||| Sbjct 49143 ATGCAGATCTTTGTGAAGACATTGACTGGCAAAACCATTACTTTGGAGGTTGAGAGCTCT 49084 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | | || ||| |||||| ||||| ||||| | || |||||| Sbjct 49083 GATACTATTGACAATGTTAAAGCTAAGATTCAGGACAAGGAAGGGATTCCTCCGGATCAG 49024 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || ||||| | ||| ||||| ||| | ||||||| | ||| | || ||||||||| Sbjct 49023 CAGAGGCTTATCTTTGCTGGTAAGCAGTTAGAGGATGGTCGCACACTTGCTGATTACAAC 48964 Query 110453 ATTCAAAAAGAATCTAC 110469 ||||||||||| ||||| Sbjct 48963 ATTCAAAAAGAGTCTAC 48947 >seq233 Length=166549 Score = 100 bits (110), Expect = 2e-16 Identities = 151/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAA--ACGGAGC-CT 110329 |||||||| || || ||||| | || ||||| |||||||| | || | |||| || Sbjct 103320 ATGCAAATTTTCGTGAAAACACTTACTGGCAAGACCATTACTCTTGAGGTAGAGAGCTCT 103379 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| ||| ||| | | || || |||||| ||||| ||||| | || |||| Sbjct 103380 GAC---ACTATCGACAATGTTAAGGCAAAGATTCAGGACAAGGAAGGGATCCCTCCGGAT 103436 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || |||||| | || | ||| ||||||||||| ||||||| | || ||||||||||| Sbjct 103437 CAGCAAAGATTGATCTTTGCCGGTAAACAGCTTGAGGATGGACGTACCTTGGCGGATTAC 103496 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGT 110481 || || || || ||||| || | ||| |||| Sbjct 103497 AATATCCAGAAGGAATCAACTCTCCACTTGGT 103528 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || || || || |||||||||||||| | || ||| Sbjct 103548 ATGCAGATCTTTGTGAAGACATTGACTGGCAAAACCATTACTTTGGAGGTTGAGAGCTCT 103607 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | | || ||| |||||| ||||| ||||| | || |||||| Sbjct 103608 GATACTATTGACAATGTTAAAGCTAAGATTCAGGACAAGGAAGGGATTCCTCCGGATCAG 103667 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || ||||| | ||| ||||| ||| | ||||||| | ||| | || ||||||||| Sbjct 103668 CAGAGGCTTATCTTTGCTGGTAAGCAGTTAGAGGATGGTCGCACACTTGCTGATTACAAC 103727 Query 110453 ATTCAAAAAGAATCTAC 110469 || ||||| || ||||| Sbjct 103728 ATCCAAAAGGAGTCTAC 103744 >seq384 Length=798633 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| ||||| ||||| || | ||||| |||||||||||| | ||| ||| | Sbjct 646320 ATGCAGATATTCGTCAAGACCCTTACCGGTAAAACCATTACCCTAGAAGTCGAGAGTTCA 646379 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | || ||| ||||| ||||| ||||| | || ||||||| Sbjct 646380 GACACAATTGACAATGTTAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCGGATCAA 646439 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||||| || | || || |||||||| ||||||| |||| | | ||||||||| Sbjct 646440 CAGAGACTAATCTTCGCTGGCAAACAGCTTGAGGATGGTCGAACGCTTTCAGATTACAAC 646499 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || |||||||| || | ||| | || | ||||| |||| || Sbjct 646500 ATCCAGAAAGAATCAACCCTTCACCTTGTACTTCGACTGAGAGGTGG 646546 >seq190 Length=891836 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| ||||| ||||| || | ||||| |||||||||||| | ||| ||| | Sbjct 381952 ATGCAGATATTCGTCAAGACCCTTACCGGTAAAACCATTACCCTAGAAGTCGAGAGTTCA 382011 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | || ||| ||||| ||||| ||||| | || ||||||| Sbjct 382012 GACACAATTGACAATGTTAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCGGATCAA 382071 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||||| || | || ||||||||||| ||||| | |||| | | ||||||||| Sbjct 382072 CAGAGACTAATCTTCGCTGGTAAACAGCTTGAGGAAGGTCGAACGCTTTCAGATTACAAC 382131 Query 110453 ATTCAAAAAGAATCTAC 110469 || || |||||||| || Sbjct 382132 ATCCAGAAAGAATCAAC 382148 >seq267 Length=1500311 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331 |||||||||||||| ||||| | || |||||||||||||| | ||| |||| || | Sbjct 618186 ATGCAAATATTTGTGAAAACCCTCACTGGCAAAACCATTACTCTAGAAGTGGAGAGCTCA 618127 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || | | | | || || ||||| ||||| ||||| | || ||| || Sbjct 618126 -GACACAATAGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCTCCGGACCA 618068 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || |||||||| | ||| || || || || || |||| | ||| | ||||||||||| Sbjct 618067 GCAGAGACTTATCTTTGCCGGCAAGCAACTCGAAGATGGTCGGACACTTGCGGATTACAA 618008 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||| || ||||| || || | ||| |||| Sbjct 618007 CATCCAGAAAGAGTCAACACTACACTTGGT 617978 >seq244 Length=507168 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA--GC-CT 110329 ||||| || ||||| || ||| | ||||| ||||| || ||| |||| ||| || || Sbjct 237044 ATGCAGATCTTTGTTAAGACTCTCACCGGGAAAACTATCACCCTCGAGGTGGAAAGCTCT 236985 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || ||| | | || || ||||| ||||| ||||| | || |||| Sbjct 236984 GAC---ACAATCGACAACGTTAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCGGAT 236928 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || ||||| ||||| | ||| || || ||||| || |||| | | || |||| || ||| Sbjct 236927 CAGCAAAGGCTTATCTTTGCCGGAAAGCAGCTCGAAGATGGCCGTACCTTGGCTGACTAC 236868 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||| || ||||| || | ||| |||| | || || || || || Sbjct 236867 AACATTCAGAAGGAATCCACCCTCCACTTGGTCCTCAGGCTTCGTGGTGG 236818 >seq411 Length=621170 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331 |||||||| ||||| || ||||| || ||||| || || ||| | ||| ||| || | Sbjct 569216 ATGCAAATTTTTGTGAAGACTTTGACTGGCAAGACTATCACCTTGGAAGTTGAGAGCTCA 569275 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || | | | || ||| |||||| ||||| ||||| | || || || Sbjct 569276 -GACACAATTGATAACGTCAAAGCTAAGATTCAGGACAAGGAAGGGATCCCACCAGACCA 569334 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| ||||| || | ||| || |||||||| ||||||| | || | ||||||||||| Sbjct 569335 ACAGAGACTCATCTTTGCTGGGAAACAGCTCGAGGATGGTCGCACGCTAGCGGATTACAA 569394 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 || ||||| ||||| || | ||| | ||||| Sbjct 569395 TATCCAAAAGGAATCAACCCTTCACCTTGTGTT 569427 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---CT 110329 |||||||| || || ||||| | || ||||| ||||| || |||| ||| || Sbjct 568304 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTTGAGAGCTCT 568363 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || ||| | | || || |||||| ||||| |||||| | || |||| Sbjct 568364 GAC---ACCATCGACAATGTTAAGGCGAAGATCCAGGACAAGGAAGGCATTCCTCCGGAT 568420 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || ||| | || | || ||||||||||| || |||| | || |||| |||||| Sbjct 568421 CAGCAGAGATTGATCTTCGCTGGTAAACAGCTAGAAGATGGTCGTACCTTGGCAGATTAC 568480 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||||| || |||||||| || | ||| |||| Sbjct 568481 AACATCCAGAAAGAATCGACCCTTCACTTGGT 568512 >seq75 Length=1220249 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 |||||||| || | || ||||||||||| || || | ||| ||||| || || || Sbjct 48540 GACAAAGAGGGTATACCACCTGATCAACAAAGGCTGATCTTTGCTGGTAAGCAACTCGAA 48599 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485 |||| | |||| |||| ||||||||||| || ||||| ||||| | || | || || Sbjct 48600 GATGGCCGAACCTTGGCTGATTACAACATCCAGAAAGAGTCTACTCTTCATCTTGTCTTG 48659 Query 110486 AGACTGCGAGGGGGAA 110501 || ||| |||| |||| Sbjct 48660 AGGCTGAGAGGTGGAA 48675 >seq280 Length=1980472 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 |||||||| || ||||| ||||| ||||| || || || || ||| | || ||| | Sbjct 1632808 AAAATGCAGATCTTTGTGAAAACCTTAACGGGGAAGACGATAACCCTAGAGGTAGAGTCA 1632867 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 || || ||| | | || ||| |||||| ||||| ||||| | || ||| Sbjct 1632868 TCAGACACGATCGACAATGTGAAAGCGAAGATCCAAGACAAGGAAGGGATCCCGCCGGAC 1632927 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || | || || | || || ||||||||||| || | |||||| | || || ||| Sbjct 1632928 CAGCAGCGTCTGATCTTCGCCGGGAAACAGCTGGAAGACGGGAGAACACTCGCCGACTAC 1632987 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || ||||| || || | || ||||| | | ||| |||| || Sbjct 1632988 AACATCCAGAAAGAGTCGACTCTTCATTTGGTGCTCCGTCTGAGAGGAGG 1633037 >seq240 Length=230833 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 |||||||| || ||||| ||||| ||||| || || || || ||| | || ||| | Sbjct 111037 AAAATGCAGATCTTTGTGAAAACCTTAACGGGGAAGACGATAACCCTAGAGGTAGAGTCA 111096 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 || || ||| | | || ||| ||||| ||||| ||||| | || ||| Sbjct 111097 TCAGACACGATCGACAATGTGAAAGCAAAGATCCAAGACAAGGAAGGGATCCCACCGGAC 111156 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || | || || | || || ||||||||||| || | |||||| | || || ||| Sbjct 111157 CAGCAGCGGCTGATCTTCGCCGGGAAACAGCTGGAAGACGGGAGAACACTCGCCGACTAC 111216 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || ||||| || ||| | || ||||| | | ||| |||| || Sbjct 111217 AACATCCAGAAAGAGTCGACGCTTCATTTGGTGCTCCGTCTGAGAGGAGG 111266 >seq60 Length=318476 Score = 82.4 bits (90), Expect = 6e-11 Identities = 139/200 (70%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---CT 110329 |||||||| || || ||||| | || ||||| ||||| || |||| ||| || Sbjct 56304 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTTGAGAGCTCT 56245 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || ||| | | || || |||||| ||||| |||||| | || |||| Sbjct 56244 GAC---ACAATCGACAATGTTAAGGCGAAGATCCAGGACAAGGAAGGCATTCCTCCGGAT 56188 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || |||||| | || | || ||||||||||| || |||| | || |||| |||||| Sbjct 56187 CAGCAAAGATTGATCTTCGCTGGTAAACAGCTAGAAGATGGTCGTACCTTGGCAGATTAC 56128 Query 110450 AACATTCAAAAAGAATCTAC 110469 ||||| || ||||| || || Sbjct 56127 AACATCCAGAAAGAGTCAAC 56108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412800412083698