Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq279 132 8e-25 seq339 120 5e-21 seq338 98.7 2e-14 seq587 93.3 7e-13 >seq279 Length=1218690 Score = 132 bits (146), Expect = 8e-25 Identities = 169/232 (73%), Gaps = 3/232 (1%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| | |||||||| || |||||| || || || ||||| ||||| ||| Sbjct 624789 GCCTCCGAGACTTGGACATCGGACATGAACCGAGATGCGAGATTCTCTAGAACGATACCG 624730 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| ||| ||||| || ||||||||||| ||||| |||||||| ||| ||||| |||| Sbjct 624729 TCGGAGGCAGCGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCGCCGTCGTTGAGA 624670 Query 796270 GAGA---CCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326 | |||| | | |||| || || || || ||||||||||| ||||| Sbjct 624669 CTGTTCTCCCAATCGCGGTTGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAAGGAT 624610 Query 796327 GCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 || ||||| || |||||||||||||| ||| || ||||| |||| ||||||| Sbjct 624609 GCTTCGGCTTTCTTGTACATCTCCCAGATCTGTGGGTAGTGGATTGGGAACA 624558 Score = 131 bits (144), Expect = 3e-24 Identities = 229/328 (70%), Gaps = 9/328 (3%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTT-GCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 |||||||| ||| ||||| |||||| | |||| | || |||||||| || || || Sbjct 625113 CCTTCGTCTCGAGAGATCAGTTCGTTTGAGAAAGTTAAC-CCAGGCATGAGTCCTCGTTT 625055 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||| ||||| ||||||| |||||| || || ||||| ||||| || || ||| || || Sbjct 625054 CTTAAGCCAGAAGATGGAACAGAAGCTTCCGGAGAAGAAGATACCTTCAACGCAAGCGAA 624995 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 | |||| || || || || || | || || || |||||| ||||||||||| Sbjct 624994 AGCAACGATTCGTTCAGCGAAGGTCTG-AGATCC-----GTCGATCCATTTCATCGCCCA 624941 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579 || || || ||| || | || | ||| || || || || ||||| ||||| |||| Sbjct 624940 CTGAGCTTTCTTCGCGACACAAGGAATCGTCTCAATCGCACGGAAGAGATGGTCTCTCTC 624881 Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639 ||| |||| ||| || |||| || || || |||| ||||| || || || Sbjct 624880 TTTGTTGTCTTTGATGTAAGTATCGAGAAGAAGACTATACATCTCAGAGTGTATATTCTC 624821 Query 794640 GATGGCGATCTGGAAGCCATA-AAAGCA 794666 || ||||||||||| || || |||||| Sbjct 624820 AATCGCGATCTGGAAACCGTAGAAAGCA 624793 >seq339 Length=148954 Score = 120 bits (132), Expect = 5e-21 Identities = 215/310 (69%), Gaps = 8/310 (3%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTT-GCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 |||||||| ||| |||||||||||| | |||| | || |||||||| || || || Sbjct 22763 CCTTCGTCTCGAGAGATCAATTCGTTTGAGAAAGTTAAC-CCAGGCATGAGTCCTCGTTT 22705 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||| ||||| ||||||| |||||| || || ||||| ||||| || || || || || Sbjct 22704 CTTAAGCCAGAAGATGGAACAGAAGCTTCCGGAGAAGAAGATACCTTCAACACAAGCGAA 22645 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 | |||| || || || || || | || || || |||||| ||||||||||| Sbjct 22644 AGCAACGATTCGTTCAGCGAAGGTCTG-AGATCC-----GTCGATCCATTTCATCGCCCA 22591 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579 || || || ||| || | || | ||| || || || || ||||| || || |||| Sbjct 22590 CTGAGCTTTCTTCGCGACGCAAGGGATCGTTTCAATCGCACGGAAGAGATGATCTCTCTC 22531 Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639 ||| |||| ||| || |||| ||| || || |||| |||||||| || || Sbjct 22530 TTTGTTGTCTTTGATGTAAGTATCGAGGAGAAGACTATACATCTCGGAGTGGATATTCTC 22471 Query 794640 GATGGCGATC 794649 || |||||| Sbjct 22470 AATCGCGATC 22461 >seq338 Length=692754 Score = 98.7 bits (108), Expect = 2e-14 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 1485475 TTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATC 1485534 || |||||||| ||||||||||| |||||||||||| ||| | ||| ||| ||| | Sbjct 574980 TTAGTGACGGCTTTGGTACCCTCAGAGACGGCGTGCTTGGATAATTCACCGGGCAACACG 574921 Query 1485535 AGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCC 1485594 || | |||||||| ||||| || |||| ||||||| ||||||| | ||| Sbjct 574920 AGCCTAACGGCGGTTTGGATTTCCCGGGACGTGATCGTGGGTTTCTTGTTATACCTAGCC 574861 Query 1485595 AGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATC 1485654 | ||| | |||||| ||| |||| |||||||||| || ||||||||| Sbjct 574860 AAGCGCGACGACTCGGTAGCGAGTTTCTCGAAGATGTCGTTGATGAAACTGTTCATGATT 574801 Query 1485655 GACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||| | ||| |||||| || | || || || ||||| || | ||| ||| Sbjct 574800 CCCATGGCTTTTCCGGAGATCCCGATATCAGGATGAACCTGTTTCAACACTTTG 574747 >seq587 Length=270664 Score = 93.3 bits (102), Expect = 7e-13 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 1485475 TTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATC 1485534 || |||||||| ||||||||||| |||||||||||| ||| | ||| ||| ||| | Sbjct 213392 TTAGTGACGGCTTTGGTACCCTCAGAGACGGCGTGCTTGGATAATTCACCGGGCAACACG 213333 Query 1485535 AGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCC 1485594 || | |||||||| ||||| || |||| ||||||| ||||||| | ||| Sbjct 213332 AGCCTAACGGCGGTTTGGATTTCCCGGGACGTGATCGTGGGTTTCTTGTTATACCTAGCC 213273 Query 1485595 AGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATC 1485654 | ||| | ||| || ||| |||| |||||||||| || ||||||||| Sbjct 213272 AAGCGCGACGACTCTGTAGCGAGTTTCTCGAAGATGTCGTTGATGAAACTGTTCATGATT 213213 Query 1485655 GACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||| | ||| |||||| || | || || || ||||| || | ||| ||| Sbjct 213212 CCCATGGCTTTTCCGGAGATCCCGATATCAGGATGAACCTGTTTCAACACTTTG 213159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915375617843654