Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq6139 104 2e-17 seq99 104 2e-17 seq233 98.7 8e-16 seq134 98.7 8e-16 seq82 93.3 3e-14 seq240 91.5 1e-13 seq61 89.7 4e-13 seq411 86.0 5e-12 seq60 86.0 5e-12 seq267 84.2 2e-11 seq280 82.4 6e-11 >seq6139 Length=4094 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| |||||||| || || || || || || || ||| | || |||| | Sbjct 322 ATGCAAATCTTTGTCAAGACGTTGACCGGGAAGACTATCACCTTGGAGGTGGAGAGTTCT 263 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || ||||| || | || ||| ||| Sbjct 262 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAAGAGGGTATCCCACCGGACCAG 203 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | || | ||| || || ||| ||||||||| || ||| |||| ||||||||| Sbjct 202 CAGAGGTTGATCTTTGCTGGAAAGCAGTTGGAGGACGGCAGAACCTTGGCTGACTACAAC 143 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || |||||||||||||| | ||| |||| ||| | |||| || || Sbjct 142 ATCCAAAAGGAGTCTACCCTTCACTTGGTCTTGCGTCTGCGTGGAGG 96 >seq99 Length=1465915 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| |||||||| || || || || || || || ||| | || |||| | Sbjct 434608 ATGCAAATCTTTGTCAAGACGTTGACCGGGAAGACTATCACCTTGGAGGTGGAGAGTTCT 434549 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || ||||| || | || ||| ||| Sbjct 434548 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAAGAGGGTATCCCACCGGACCAG 434489 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | || | ||| || || ||| ||||||||| || ||| |||| ||||||||| Sbjct 434488 CAGAGGTTGATCTTTGCTGGAAAGCAGTTGGAGGACGGCAGAACCTTGGCTGACTACAAC 434429 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || |||||||||||||| | ||| |||| ||| | |||| || || Sbjct 434428 ATCCAAAAGGAGTCTACCCTTCACTTGGTCTTGCGTCTGCGTGGAGG 434382 >seq233 Length=166549 Score = 98.7 bits (108), Expect = 8e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||| || || || || |||||||||||||| | || ||| ||| Sbjct 103548 ATGCAGATCTTTGTGAAGACATTGACTGGCAAAACCATTACTTTGGAGGTTGAGAGCTCT 103607 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| | | | | || ||| |||||| || || ||||| | || |||||| Sbjct 103608 -GATACTATTGACAATGTTAAAGCTAAGATTCAGGACAAGGAAGGGATTCCTCCGGATCA 103666 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | ||| ||||| ||| | ||||| | ||| | || || ||||| Sbjct 103667 GCAGAGGCTTATCTTTGCTGGTAAGCAGTTAGAGGATGGTCGCACACTTGCTGATTACAA 103726 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| |||||||||||||| Sbjct 103727 CATCCAAAAGGAGTCTAC 103744 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||||||||| || ||||| | || ||||| |||||||| | || ||| ||| Sbjct 103320 ATGCAAATTTTCGTGAAAACACTTACTGGCAAGACCATTACTCTTGAGGTAGAGAGCTCT 103379 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||| ||| | | || || ||||||| || || ||||| | || |||||| Sbjct 103380 -GACACTATCGACAATGTTAAGGCAAAGATTCAGGACAAGGAAGGGATCCCTCCGGATCA 103438 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| ||| | || | ||| ||||||||||| ||||| | || ||||||| ||||| Sbjct 103439 GCAAAGATTGATCTTTGCCGGTAAACAGCTTGAGGATGGACGTACCTTGGCGGATTACAA 103498 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || ||||| || || | ||| |||| | || || |||| || Sbjct 103499 TATCCAGAAGGAATCAACTCTCCACTTGGTTCTCAGGTTAAGAGGTGG 103546 >seq134 Length=106205 Score = 98.7 bits (108), Expect = 8e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||| || || || || |||||||||||||| | || ||| ||| Sbjct 49143 ATGCAGATCTTTGTGAAGACATTGACTGGCAAAACCATTACTTTGGAGGTTGAGAGCTCT 49084 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| | | | | || ||| |||||| || || ||||| | || |||||| Sbjct 49083 -GATACTATTGACAATGTTAAAGCTAAGATTCAGGACAAGGAAGGGATTCCTCCGGATCA 49025 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | ||| ||||| ||| | ||||| | ||| | || || ||||| Sbjct 49024 GCAGAGGCTTATCTTTGCTGGTAAGCAGTTAGAGGATGGTCGCACACTTGCTGATTACAA 48965 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||||||||| |||||||| Sbjct 48964 CATTCAAAAAGAGTCTAC 48947 >seq82 Length=470516 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||| || ||||| || ||||||||||| ||| |||| ||| ||| Sbjct 88100 ATGCAGATCTTTGTGAAGACTTTGACTGGCAAAACCATCACCCTCGAGGTTGAGAGCTCA 88041 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | | || ||| ||||| |||||||| || | || ||| || Sbjct 88040 -GACACCATTGACAATGTCAAAGCCAAGATCCAAGATAAAGAGGGAATCCCACCGGACCA 87982 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | ||||| || ||||| || |||| | || | || |||||||| Sbjct 87981 GCAGAGGCTTATATTCGCGGGCAAGCAGCTTGAAGACGGAAGGACTCTTGCTGACTACAA 87922 Query 107735 CATTCAAAAGGAGTCTACGTTGCAC 107759 || ||||||||||| || ||||| Sbjct 87921 TATCCAAAAGGAGTCGACCCTGCAC 87897 >seq240 Length=230833 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||||||| || ||||| ||||| ||||| || || || || ||| | || ||| | Sbjct 111037 AAAATGCAGATCTTTGTGAAAACCTTAACGGGGAAGACGATAACCCTAGAGGTAGAGTCA 111096 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 || || ||| | | || ||| |||||| || || ||||| | || ||| Sbjct 111097 TCAGACACGATCGACAATGTGAAAGCAAAGATCCAAGACAAGGAAGGGATCCCACCGGAC 111156 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| | || || | || || ||||||||||| |||| | |||| | || |||||| Sbjct 111157 CAGCAGCGGCTGATCTTCGCCGGGAAACAGCTGGAAGACGGGAGAACACTCGCCGACTAC 111216 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| || || ||||| ||| | || ||||| Sbjct 111217 AACATCCAGAAAGAGTCGACGCTTCATTTGGTG 111249 >seq61 Length=1440766 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||| || ||||| || ||||||||||| ||| |||| ||| ||| Sbjct 1073656 ATGCAGATCTTTGTGAAGACTTTGACTGGCAAAACCATCACCCTCGAGGTTGAGAGCTCA 1073715 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | | || ||| ||||| |||||||| || | || ||| || Sbjct 1073716 -GACACCATTGACAATGTCAAAGCCAAGATCCAAGATAAAGAGGGAATCCCACCGGACCA 1073774 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | ||||| || ||||| || |||| | || | || |||||||| Sbjct 1073775 GCAGAGGCTTATATTCGCGGGCAAGCAGCTTGAAGACGGAAGGACTCTTGCTGACTACAA 1073834 Query 107735 CATTCAAAAGGAGTCTAC 107752 || ||||||||||| || Sbjct 1073835 TATCCAAAAGGAGTCGAC 1073852 >seq411 Length=621170 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || || || || ||||||||||| ||| | || ||| | Sbjct 568532 ATGCAGATCTTTGTGAAGACGTTGACTGGCAAAACCATCACCCTTGAGGTTGAGAGTTCA 568591 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| | | | | || || ||||| |||||||| || | || ||||||| Sbjct 568592 GACACTATTGACAATGTTAAGGCTAAGATCCAGGATAAAGAGGGAATCCCACCGGATCAG 568651 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||||||||| | ||| ||||| ||||| ||||| | ||| | || |||||||| Sbjct 568652 CAGAGACTTATCTTTGCTGGTAAGCAGCTAGAGGATGGTCGCACACTTGCTGACTACAAT 568711 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || || ||||| || | || ||||| Sbjct 568712 ATCCAGAAAGAGTCCACTCTCCATTTGGTG 568741 >seq60 Length=318476 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || || || || ||||||||||| ||| |||| ||| | Sbjct 56076 ATGCAGATCTTTGTGAAGACGTTGACTGGCAAAACCATCACCCTCGAGGTTGAGAGTTCA 56017 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| | | | | || || ||||| |||||||| || | || ||||||| Sbjct 56016 GACACTATTGACAATGTTAAGGCTAAGATCCAGGATAAAGAGGGAATCCCACCGGATCAG 55957 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||||||||| | ||| |||||||| | ||||| | ||| | || |||||||| Sbjct 55956 CAGAGACTTATCTTTGCCGGTAAACAATTAGAGGATGGTCGCACACTAGCTGACTACAAT 55897 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || || ||||| || | || ||||| Sbjct 55896 ATCCAGAAAGAGTCCACTCTCCATTTGGTG 55867 >seq267 Length=1500311 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAG 107708 ||||| |||||| | | ||| |||||||||||||| | || |||||||| || || Sbjct 618549 GATAAGGAAGGCATCACTCCGGACCAGCAGAGACTTATCTTCGCTGGTAAACAACTTGAA 618490 Query 107709 GACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || | | ||| |||| |||||||| ||||| |||||||| || | ||| |||| | Sbjct 618489 GATGGCCGTACATTGGCTGACTACAATATTCAGAAGGAGTCAACTCTACACTTGGTTCTT 618430 Query 107769 AGATTGCGAGGGGG 107782 || ||| |||| || Sbjct 618429 AGGTTGAGAGGTGG 618416 >seq280 Length=1980472 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||||||| || ||||| ||||| ||||| || || || || ||| | || ||| | Sbjct 1632808 AAAATGCAGATCTTTGTGAAAACCTTAACGGGGAAGACGATAACCCTAGAGGTAGAGTCA 1632867 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 || || ||| | | || ||| ||||| || || ||||| | || ||| Sbjct 1632868 TCAGACACGATCGACAATGTGAAAGCGAAGATCCAAGACAAGGAAGGGATCCCGCCGGAC 1632927 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| | || || | || || ||||||||||| |||| | |||| | || |||||| Sbjct 1632928 CAGCAGCGTCTGATCTTCGCCGGGAAACAGCTGGAAGACGGGAGAACACTCGCCGACTAC 1632987 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| || || ||||| || | || ||||| Sbjct 1632988 AACATCCAGAAAGAGTCGACTCTTCATTTGGTG 1633020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398837005308154