Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq60 105 1e-17 seq411 91.5 2e-13 >seq60 Length=318476 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | || || || || || ||||| || || | || || || | | Sbjct 56075 TGCAGATCTTTGTGAAGACGTTGACTGGCAAAACCATCACCCTCGAGGTTGAGAGTTCAG 56016 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| | ||||| || ||| || || |||||| || || ||||| ||||| | Sbjct 56015 ACACTATTGACAATGTTAAGGCTAAGATCCAGGATAAAGAGGGAATCCCACCGGATCAGC 55956 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||||| || ||||| |||||||||||||| ||| | | || || | || || |||| Sbjct 55955 AGAGACTTATCTTTGCCGGTAAACAATTAGAGGATGGTCGCACACTAGCTGACTACAATA 55896 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | || ||||| || ||| ||||||| || | || | ||||| |||| Sbjct 55895 TCCAGAAAGAGTCCACTCTCCATTTGGTGCTTCGTCTCAGAGGTGGTA 55848 Score = 87.8 bits (96), Expect = 3e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | |||||| | || || || || || ||| | || || || | Sbjct 56303 TGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTTGAGAGCTCTG 56244 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | ||||| || || || || || ||||||||||| || ||||| | Sbjct 56243 ACACAATCGACAATGTTAAGGCGAAGATCCAGGACAAGGAAGGCATTCCTCCGGATCAGC 56184 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | || || || |||||||| |||| ||| | | || || ||||||| || | Sbjct 56183 AAAGATTGATCTTCGCTGGTAAACAGCTAGAAGATGGTCGTACCTTGGCAGATTACAACA 56124 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | || ||||| || || | ||||| || | || ||||||| |||| Sbjct 56123 TCCAGAAAGAGTCAACCCTTCATTTGGTTCTCCGGCTAAGAGGTGGTA 56076 >seq411 Length=621170 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | |||||| | || || || || || ||| | || || || | Sbjct 568305 TGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTTGAGAGCTCTG 568364 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | ||||| || || || || || ||||||||||| || ||||| | Sbjct 568365 ACACCATCGACAATGTTAAGGCGAAGATCCAGGACAAGGAAGGCATTCCTCCGGATCAGC 568424 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||| | || || || |||||||| |||| ||| | | || || ||||||| || | Sbjct 568425 AGAGATTGATCTTCGCTGGTAAACAGCTAGAAGATGGTCGTACCTTGGCAGATTACAACA 568484 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | || ||||||||||| | || || || | || |||||||| |||| Sbjct 568485 TCCAGAAAGAATCGACCCTTCACTTGGTTCTCCGGTTAAGAGGTGGTA 568532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786085955523120