Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq6872 145 9e-30 seq353 145 9e-30 seq351 145 9e-30 >seq6872 Length=15469 Score = 145 bits (160), Expect = 9e-30 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 138538 TACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCTGGT 138597 ||| | ||||| |||||||| ||||| || || ||| | || ||||| || ||||||||| Sbjct 14818 TACGTTCTTGACGCTGCTGAGGAAGCTGGAATCGATTTGCCTTACTCTTGCCGTGCTGGT 14759 Query 138598 GCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTCT 138657 | ||||| | ||||||||||||| | || ||| |||| || |||||||||||| | Sbjct 14758 TCTTGTTCGAGCTGTGCTGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGT 14699 Query 138658 TTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAGCATACCCCACA 138717 |||||||||||||| || |||| ||||| ||| | | || || | || || || || Sbjct 14698 TTCCTTGATGATGAGCAGATTGATGCAGGGTTTGTTCTCACCTGTGCCGCTTATCCTACC 14639 Query 138718 TCCGATTGTATAATTGAAACTGAAAAAGAGGACGA 138752 || ||| || |||||||| | ||||| || || Sbjct 14638 TCTGATGTTACCATTGAAACCCACAAAGAAGAAGA 14604 >seq353 Length=447834 Score = 145 bits (160), Expect = 9e-30 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 138538 TACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCTGGT 138597 ||| | ||||| |||||||| ||||| || || ||| | || ||||| || ||||||||| Sbjct 266833 TACGTTCTTGACGCTGCTGAGGAAGCTGGAATCGATTTGCCTTACTCTTGCCGTGCTGGT 266892 Query 138598 GCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTCT 138657 | ||||| | ||||||||||||| | || ||| |||| || |||||||||||| | Sbjct 266893 TCTTGTTCGAGCTGTGCTGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGT 266952 Query 138658 TTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAGCATACCCCACA 138717 |||||||||||||| || |||| ||||| ||| | | || || | || || || || Sbjct 266953 TTCCTTGATGATGAGCAGATTGATGCAGGGTTTGTTCTCACCTGTGCCGCTTATCCTACC 267012 Query 138718 TCCGATTGTATAATTGAAACTGAAAAAGAGGACGA 138752 || ||| || |||||||| | ||||| || || Sbjct 267013 TCTGATGTTACCATTGAAACCCACAAAGAAGAAGA 267047 >seq351 Length=837821 Score = 145 bits (160), Expect = 9e-30 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 138538 TACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCTGGT 138597 ||| | |||||||||||||| ||||| || || ||| | || ||||| || ||||||||| Sbjct 562161 TACGTTCTTGATGCTGCTGAGGAAGCTGGAATCGATTTGCCTTACTCTTGCCGTGCTGGT 562102 Query 138598 GCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTCT 138657 | ||||| | ||| ||||||||| | || ||| |||| || |||||||||||| | Sbjct 562101 TCTTGTTCGAGCTGCGCTGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGT 562042 Query 138658 TTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAGCATACCCCACA 138717 |||||||||||||| || |||| ||||| ||| | | || || | || || || || Sbjct 562041 TTCCTTGATGATGAGCAGATTGATGCAGGGTTTGTTCTCACCTGTGCCGCTTATCCTACC 561982 Query 138718 TCCGATTGTATAATTGAAACTGAAAAAGAGGACGA 138752 || ||| || |||||||| | ||||| || || Sbjct 561981 TCTGATGTTACCATTGAAACCCACAAAGAAGAAGA 561947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605605225103760