Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq339 96.9 8e-15 seq279 87.8 4e-12 >seq339 Length=148954 Score = 96.9 bits (106), Expect = 8e-15 Identities = 136/188 (72%), Gaps = 5/188 (3%) Strand=Plus/Plus Query 131801 AAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGAT-TCCGCTAATTTTTCTACAAG 131859 |||||||| | ||||| || |||||||| | | ||| || | | || || | | Sbjct 22579 AAGAAAGCTCAGTGGGCGATGAAATGGATCGACG--GATCTCAG--ACCTTCGCTGAACG 22634 Query 131860 ACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTT 131919 | | || ||||| ||||||||||||||||| ||||| || || |||||| | ||||| Sbjct 22635 AATCGTTGCTTTCGCTTGTGTTGAAGGTATCTTCTTCTCCGGAAGCTTCTGTTCCATCTT 22694 Query 131920 TTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAG 131979 ||||||||||| || ||| | |||||||| | | || || || |||| ||||| | Sbjct 22695 CTGGCTTAAGAAACGAGGACTCATGCCTGGGTTAACTTTCTCAAACGAATTGATCTCTCG 22754 Query 131980 AGATGAAG 131987 ||| |||| Sbjct 22755 AGACGAAG 22762 >seq279 Length=1218690 Score = 87.8 bits (96), Expect = 4e-12 Identities = 134/188 (71%), Gaps = 5/188 (3%) Strand=Plus/Plus Query 131801 AAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGAT-TCCGCTAATTTTTCTACAAG 131859 |||||||| | ||||| || |||||||| | | ||| || | | || || | | Sbjct 624929 AAGAAAGCTCAGTGGGCGATGAAATGGATCGACG--GATCTCAG--ACCTTCGCTGAACG 624984 Query 131860 ACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTT 131919 | | || ||||| ||||| ||||||||||| ||||| || || |||||| | ||||| Sbjct 624985 AATCGTTGCTTTCGCTTGCGTTGAAGGTATCTTCTTCTCCGGAAGCTTCTGTTCCATCTT 625044 Query 131920 TTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAG 131979 ||||||||||| || ||| | |||||||| | | || || || || | ||||| | Sbjct 625045 CTGGCTTAAGAAACGAGGACTCATGCCTGGGTTAACTTTCTCAAACGAACTGATCTCTCG 625104 Query 131980 AGATGAAG 131987 ||| |||| Sbjct 625105 AGACGAAG 625112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186688323364746