Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq280 150 1e-31 seq240 132 3e-26 seq60 116 2e-21 seq411 104 2e-17 seq82 104 2e-17 seq525 102 5e-17 seq134 102 5e-17 seq69 102 5e-17 seq270 98.7 7e-16 seq233 98.7 7e-16 seq61 96.9 2e-15 seq380 93.3 3e-14 >seq280 Length=1980472 Score = 150 bits (166), Expect = 1e-31 Identities = 173/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| ||||||| ||| | ||||||||| ||||| |||||| || |||||||| |||| Sbjct 1633039 CACCTCCTCTCAGACGGAGCACCAAATGAAGAGTCGACTCTTTCTGGATGTTGTAGTCGG 1632980 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 |||||| | |||| |||| ||||| ||||| || |||| ||||||||| || ||| Sbjct 1632979 CGAGTGTTCTCCCGTCTTCCAGCTGTTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGCG 1632920 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||| ||||| || ||| ||||| ||| ||| | ||||| ||| || Sbjct 1632919 GGATCCCTTCCTTGTCTTGGATCTTCGCTTTCA-CATTGTCGATCGTGTCTGATGACTCT 1632861 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || ||||| || || ||||| ||||| |||||||||||||| Sbjct 1632860 ACCTCTAGGGTTATCGTCTTCCCCGTTAAGGTTTTCACAAAGATCTGCAT 1632811 >seq240 Length=230833 Score = 132 bits (146), Expect = 3e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| ||||||| ||| | ||||||||| || || |||||| || |||||||| |||| Sbjct 111268 CACCTCCTCTCAGACGGAGCACCAAATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGG 111209 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 |||||| | |||| |||| ||||| ||||| || |||| |||||||| || | | Sbjct 111208 CGAGTGTTCTCCCGTCTTCCAGCTGTTTCCCGGCGAAGATCAGCCGCTGCTGGTCCGGTG 111149 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||| ||||| || || ||||| ||| ||| | ||||| ||| || Sbjct 111148 GGATCCCTTCCTTGTCTTGGATCTTTGCTTTCA-CATTGTCGATCGTGTCTGATGACTCT 111090 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || ||||| || || ||||| ||||| |||||||||||||| Sbjct 111089 ACCTCTAGGGTTATCGTCTTCCCCGTTAAGGTTTTCACAAAGATCTGCAT 111040 >seq60 Length=318476 Score = 116 bits (128), Expect = 2e-21 Identities = 168/233 (72%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | ||| | ||||||||| |||||| |||||| || || ||||| || | Sbjct 55849 ACCACCTCTGAGACGAAGCACCAAATGGAGAGTGGACTCTTTCTGGATATTGTAGTCAGC 55908 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||||| | || || |||||||| |||||||| || | | ||||||||| | || Sbjct 55909 TAGTGTGCGACCATCCTCTAATTGTTTACCGGCAAAGATAAGTCTCTGCTGATCCGGTGG 55968 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGAT---T 33697 | || ||||| || || || || ||||| |||| ||||| ||| | Sbjct 55969 GATTCCCTCTTTATCCTGGATCTTAGCCTT-AACATTGTCAATAGTGTC---TGAACTCT 56024 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || | ||||| ||||| || || ||||| || ||||||||||||||| Sbjct 56025 CAACCTCGAGGGTGATGGTTTTGCCAGTCAACGTCTTCACAAAGATCTGCATA 56077 >seq411 Length=621170 Score = 104 bits (114), Expect = 2e-17 Identities = 165/233 (71%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | ||| | ||||||||| |||||| |||||| || || ||||| || | Sbjct 568759 ACCACCTCTGAGACGAAGCACCAAATGGAGAGTGGACTCTTTCTGGATATTGTAGTCAGC 568700 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||||| | || || | || || || ||||| || | | ||||||||| | || Sbjct 568699 AAGTGTGCGACCATCCTCTAGCTGCTTACCAGCAAAGATAAGTCTCTGCTGATCCGGTGG 568640 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGAT---T 33697 | || ||||| || || || || ||||| |||| ||||| ||| | Sbjct 568639 GATTCCCTCTTTATCCTGGATCTTAGCCTT-AACATTGTCAATAGTGTC---TGAACTCT 568584 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || |||| ||||| ||||| || || ||||| || ||||||||||||||| Sbjct 568583 CAACCTCAAGGGTGATGGTTTTGCCAGTCAACGTCTTCACAAAGATCTGCATA 568531 >seq82 Length=470516 Score = 104 bits (114), Expect = 2e-17 Identities = 165/233 (71%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||||| ||| | ||||||||| || ||| |||||| || ||||||||||||| Sbjct 87645 ACCACCTCTCAGACGAAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAATCGGC 87704 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||||| | || || | || || |||||||| || | | ||||||||| | || Sbjct 87705 CAAGGTGCGACCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGATCCGGTGG 87764 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | || ||||| || || || | || |||| ||| | ||| || ||| | Sbjct 87765 AATTCCCTCTTTATCTTGGATCTT-AGCTTTGACATTGTCAATGGTATCTGAGCT---CT 87820 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || | ||||| |||||||| || | || || ||||||||||||||| Sbjct 87821 CAACCTCTAGGGTGATTGTTTTACCCGTGAGAGTCTTCACAAAGATCTGCATA 87873 Score = 102 bits (112), Expect = 5e-17 Identities = 164/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| ||||| | |||||||| || ||| |||||| || ||||||||||||| Sbjct 88101 ACCACCTCTTAAACGGAGAACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAATCGGC 88160 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||||| | || || | ||||| ||||| || ||||| | ||||| || | || Sbjct 88161 CAAGGTGCGGCCATCTTCAAGCTGTTTACCGGCGAAGATCAATCTTTGCTGGTCCGGAGG 88220 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | ||||| ||||| || || || | ||||| ||| | |||||| ||| | Sbjct 88221 AATGCCTTCCTTGTCCTGGATCTT-TGCCTTAACATTGTCGATGGTGTCAGAGCT---CT 88276 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || |||| ||||| || ||||| || | ||||| || || || ||||| Sbjct 88277 CGACCTCAAGAGTGATGGTCTTACCAGTGAGTGTTTTCACGAAAATTTGCAT 88328 >seq525 Length=802623 Score = 102 bits (112), Expect = 5e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| |||| | || ||| |||| || | || |||||||| || Sbjct 20332 CTCCTTCTGGATGTTGTAGTCGGCTAAGGTTCGTCCGTCCTCGAGCTGCTTTCCGGCGAA 20391 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 |||||| |||||||| || |||| | ||||| ||||| || || |||| ||| Sbjct 20392 AATCAATCGCTGCTGGTCCGGCGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTCA-CAT 20450 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | |||||| ||| || || || | |||||||| || || |||| ||||| | Sbjct 20451 TGTCGATGGTGTCAGATGACTCTACCTCGAGGGTGATCGTCTTCCCCGTTAGGGTTTTCA 20510 Query 33737 CAAAGATCTGCAT 33749 | ||||||||||| Sbjct 20511 CGAAGATCTGCAT 20523 >seq134 Length=106205 Score = 102 bits (112), Expect = 5e-17 Identities = 164/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | ||| | ||| | ||| ||||| ||||||||| ||||||||||| | Sbjct 48916 ACCACCTCTGAGACGAAGCACAAGATGGAGAGTAGACTCTTTTTGAATGTTGTAATCAGC 48975 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||||| | || || || || || || ||||| || | | ||||||||| | || Sbjct 48976 AAGTGTGCGACCATCCTCTAACTGCTTACCAGCAAAGATAAGCCTCTGCTGATCCGGAGG 49035 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | ||||| ||||| ||| || | || ||||| ||| | || || ||| | Sbjct 49036 AATCCCTTCCTTGTCCTGAATCTT-AGCTTTAACATTGTCAATAGTATCAGAGCT---CT 49091 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | || || ||||| || || || || || |||||||||||||| Sbjct 49092 CAACCTCCAAAGTAATGGTTTTGCCAGTCAATGTCTTCACAAAGATCTGCAT 49143 >seq69 Length=1777342 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | ||| | ||||| ||| || || || || || |||||||| |||| Sbjct 335979 CACCACCACGGAGACGGAGCACCAGATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGG 336038 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 || ||||| |||| |||| || || ||||| || ||||| |||||||| || | | Sbjct 336039 CCAGAGTGCGGCCGTCTTCCAGCTGCTTCCCGGCGAATATCAACCGCTGCTGGTCCGGTG 336098 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||| ||||| || ||| ||||| ||| ||| | ||||| || ||| Sbjct 336099 GGATCCCTTCCTTGTCTTGGATCTTCGCTTTCA-CATTGTCGATCGTGTCTGACGACTCC 336157 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || || || || |||| ||||| || ||||||||||| Sbjct 336158 ACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 336207 >seq270 Length=1109440 Score = 98.7 bits (108), Expect = 7e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| |||| | || ||| |||| || | || |||||||| || Sbjct 20349 CTCCTTCTGGATGTTGTAGTCGGCTAAGGTTCGTCCGTCCTCGAGCTGCTTTCCGGCGAA 20408 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 |||||| |||||||| || | || | ||||| ||||| || || |||| ||| Sbjct 20409 AATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTCA-CAT 20467 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | |||||| ||| || || || | |||||||| || || |||| ||||| | Sbjct 20468 TGTCGATGGTGTCAGATGACTCTACCTCGAGGGTGATCGTCTTCCCCGTTAGGGTTTTCA 20527 Query 33737 CAAAGATCTGCAT 33749 | ||||||||||| Sbjct 20528 CGAAGATCTGCAT 20540 >seq233 Length=166549 Score = 98.7 bits (108), Expect = 7e-16 Identities = 164/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | ||| | ||| | ||| ||||| ||| ||||| ||||||||||| | Sbjct 103775 ACCACCTCTGAGACGAAGCACAAGATGGAGAGTAGACTCCTTTTGGATGTTGTAATCAGC 103716 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||||| | || || || || || || ||||| || | | ||||||||| | || Sbjct 103715 AAGTGTGCGACCATCCTCTAACTGCTTACCAGCAAAGATAAGCCTCTGCTGATCCGGAGG 103656 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | ||||| ||||| ||| || | || ||||| ||| | || || ||| | Sbjct 103655 AATCCCTTCCTTGTCCTGAATCTT-AGCTTTAACATTGTCAATAGTATCAGAGCT---CT 103600 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || | || || ||||| || || || || || ||||||||||||||| Sbjct 103599 CAACCTCCAAAGTAATGGTTTTGCCAGTCAATGTCTTCACAAAGATCTGCATA 103547 >seq61 Length=1440766 Score = 96.9 bits (106), Expect = 2e-15 Identities = 163/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| ||||| | |||||||| || ||| |||||| || ||||||||||||| Sbjct 1073655 ACCACCTCTTAAACGGAGAACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAATCGGC 1073596 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||||| | || || | ||||| ||||| || ||||| | ||||| || | || Sbjct 1073595 CAAGGTGCGGCCATCTTCAAGCTGTTTACCGGCGAAGATCAATCTTTGCTGGTCCGGAGG 1073536 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | ||||| |||| || || || | ||||| ||| | |||||| ||| | Sbjct 1073535 AATGCCTTCCCTGTCCTGGATCTT-TGCCTTAACATTGTCGATGGTGTCAGAGCT---CT 1073480 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || |||| ||||| || ||||| || | ||||| || || || ||||| Sbjct 1073479 CGACCTCAAGAGTGATGGTCTTACCAGTGAGTGTTTTCACGAAAATTTGCAT 1073428 >seq380 Length=167695 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | ||| | ||||| ||| || || || || || |||||||| || | Sbjct 104815 CACCACCACGGAGACGGAGCACCAGATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCCG 104874 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 || ||||| |||| |||| || || ||||| || ||||| |||||||| || | | Sbjct 104875 CCAGAGTGCGGCCGTCTTCCAGCTGCTTCCCGGCGAATATCAACCGCTGCTGGTCCGGTG 104934 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||| ||||| || ||| ||||| ||| ||| | ||||| || || Sbjct 104935 GGATCCCTTCCTTGTCTTGGATCTTCGCTTTCA-CATTGTCGATCGTGTCTGACGACTCG 104993 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || || || || |||| ||||| || ||||||||||| Sbjct 104994 ACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 105043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328671206229120