Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_025429.1 Length=156446 Score E Sequences producing significant alignments: (Bits) Value seq4050 87.8 2e-12 >seq4050 Length=1194 Score = 87.8 bits (96), Expect = 2e-12 Identities = 124/178 (70%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 148838 TCATCGAGCGTATNNNNNNNNNNGAAGAAGAGAAGAAGACGATCGGCGATGACATCAAGG 148897 |||||||||| || || ||||| ||||| || ||| |||| |||||||||| Sbjct 695 TCATCGAGCGCATCGAACGGCTCGAGGAAGAAAAGAAAACCATCAGCGACGACATCAAGG 636 Query 148898 ACGTCTACGGCGATGCCAAAGGAAATGGCTTCGACACCAAGATCTTGAAGAAGGTCATCA 148957 ||| ||||||||| ||||| || || ||||| ||| |||| | || | |||| Sbjct 635 ACGGCTACGGCGAGGCCAAGGGCAACGGCTTTGACGTCAAGGTGCTGCGCACCATCATTC 576 Query 148958 ACATCCGCAAGAAGGATGAGCAGGAGCGCATGGAAGAGGAAGCAATCCTCGATACGTA 149015 ||| |||||| |||| | | ||||| ||| ||||| | ||||| || || || Sbjct 575 GCATGCGCAAGCAGGACGCCGACGAGCGTCAGGAGCAGGAAACCATCCTGGAAACCTA 518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500447986419360