Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq82 87.8 2e-12 seq60 86.0 6e-12 >seq82 Length=470516 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 131906 AAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGC 131965 || || | ||||||||| | | | |||||||| || |||||||| ||| || ||| || Sbjct 88111 AAACGGAGAACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAATCGGCCAAGGTGCGG 88170 Query 131966 GAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCT 132025 |||||| ||||||||||||| |||| | | || || || ||||| |||||||| Sbjct 88171 CCATCTTCAAGCTGTTTACCGGCGAAGATCAATCTTTGCTGGTCCGGAGGAATGCCTTCC 88230 Query 132026 TTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTC 132085 || || || ||| || | | || | || || | ||| || || | || Sbjct 88231 TTGTCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCGACCTCAAGAGTG 88290 Query 132086 AGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || |||||||| || ||||| | |||||| ||||| Sbjct 88291 ATGGTCTTACCAGTGAGTGTTTTCACGAAAATTTGCAT 88328 >seq60 Length=318476 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||||||| | | |||||||||| || |||||||| || || |||||| |||||| Sbjct 56095 AACCAAATGAAGGGTTGACTCTTTCTGGATGTTGTAATCTGCCAAGGTACGACCATCTTC 56154 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 ||||||||||| | |||| | | || ||||| ||||| |||||||| || || Sbjct 56155 TAGCTGTTTACCAGCGAAGATCAATCTTTGCTGATCCGGAGGAATGCCTTCCTTGTCCTG 56214 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 || || || | | || | || || | ||| || |||| || | || || Sbjct 56215 GATCTTCGCCTTAACATTGTCGATTGTGTCAGAGCTCTCAACCTCGAGAGTGATGGTCTT 56274 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || ||||| | |||||| ||||| Sbjct 56275 GCCAGTGAGTGTTTTCACGAAAATTTGCAT 56304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476562430758960