Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq325 82.4 7e-11 seq75 82.4 7e-11 >seq325 Length=1091643 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || || || || ||| | ||||| | |||||||| | Sbjct 552524 ATGCAGATTTTTGTCAAGACTTTGACGGGCAAAACCATCACTCTAGAAGTCGAGAGCTCT 552583 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || || || ||| || ||||| || || | || || ||| Sbjct 552584 GATACGATTGATAACGTGAAGGCCAAGATTCAAGACAAAGAAGGGATCACACCGGACCAG 552643 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || ||||| || | | ||| |||||||||||||||| | ||| | |||||||||| Sbjct 552644 CAGAGACTAATCTTTGCCGGGAAACAACTCGAAGATGGTCGAACACTTGCCGATTACAAT 552703 Query 25355 ATTCAAAAAGAATCCACCATTCA 25377 || || ||||| || || |||| Sbjct 552704 ATCCAGAAAGAGTCGACTCTTCA 552726 >seq75 Length=1220249 Score = 82.4 bits (90), Expect = 7e-11 Identities = 106/145 (73%), Gaps = 1/145 (1%) Strand=Plus/Plus Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327 || |||||||||||||| || ||||| ||||| || || | | || || ||||||||| Sbjct 48540 GACAAAGAGGGTATACCACCTGATCAACAAAGGCTGATCTTTGCTGGTAAGCAACTCGAA 48599 Query 25328 GATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387 |||| ||| | |||||||| || || ||||| || || ||||| | || || Sbjct 48600 GATGGCCGAACCTTGGCTGATTACAACATCCAGAAAGAGTCTACTCTTCATCTTGTCTTG 48659 Query 25388 AGATTGAGAGGAGGAA-AATGATCA 25411 || ||||||| |||| ||||||| Sbjct 48660 AGGCTGAGAGGTGGAACCATGATCA 48684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445048855715520