Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq134 93.3 3e-14 seq233 89.7 4e-13 seq75 82.4 6e-11 >seq134 Length=106205 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || ||||| || |||||||||||||| |||||||| |||| || | Sbjct 49143 ATGCAGATCTTTGTGAAGACATTGACTGGCAAAACCATTACTTTGGAGGTTGAGAGCTCT 49084 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || ||| | | || ||| || ||| ||||| ||||| | || ||||| Sbjct 49083 GATACTATTGACAATGTTAAAGCTAAGATTCAGGACAAGGAAGGGATTCCTCCGGATCAG 49024 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || |||||||| | ||| || || || ||||| ||| | || | | ||||||||| Sbjct 49023 CAGAGGCTTATCTTTGCTGGTAAGCAGTTAGAGGATGGTCGCACACTTGCTGATTACAAC 48964 Query 106440 ATACAAAAAGAATCTACACTACAT 106463 || |||||||| ||||| || ||| Sbjct 48963 ATTCAAAAAGAGTCTACTCTCCAT 48940 >seq233 Length=166549 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || ||||| || |||||||||||||| |||||||| |||| || | Sbjct 103548 ATGCAGATCTTTGTGAAGACATTGACTGGCAAAACCATTACTTTGGAGGTTGAGAGCTCT 103607 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || ||| | | || ||| || ||| ||||| ||||| | || ||||| Sbjct 103608 GATACTATTGACAATGTTAAAGCTAAGATTCAGGACAAGGAAGGGATTCCTCCGGATCAG 103667 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || |||||||| | ||| || || || ||||| ||| | || | | ||||||||| Sbjct 103668 CAGAGGCTTATCTTTGCTGGTAAGCAGTTAGAGGATGGTCGCACACTTGCTGATTACAAC 103727 Query 106440 ATACAAAAAGAATCTACACTACAT 106463 || ||||| || ||||| || ||| Sbjct 103728 ATCCAAAAGGAGTCTACTCTCCAT 103751 >seq75 Length=1220249 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 106353 GACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAA 106412 |||||||| || | || ||||||||||||||| || | ||| || || ||| | ||| Sbjct 48540 GACAAAGAGGGTATACCACCTGATCAACAAAGGCTGATCTTTGCTGGTAAGCAACTCGAA 48599 Query 106413 GATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACATTTAGTATTG 106472 ||| ||| ||| ||||||||||| || ||||| ||||| || ||| | || ||| Sbjct 48600 GATGGCCGAACCTTGGCTGATTACAACATCCAGAAAGAGTCTACTCTTCATCTTGTCTTG 48659 Query 106473 AGGTTACGAGGAGGA 106487 ||| | |||| ||| Sbjct 48660 AGGCTGAGAGGTGGA 48674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402289460833088