Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq279 208 1e-47 seq339 100 4e-15 >seq279 Length=1218690 Score = 208 bits (230), Expect = 1e-47 Identities = 391/565 (69%), Gaps = 16/565 (3%) Strand=Plus/Plus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| |||| ||||| | ||| ||||| |||||| | |||| |||| || ||||| Sbjct 624558 TGTTCCCAATCCACTACCCACAGATCTGGGAGATGTACAAGAAAG-CCGAAGCATCCTTC 624616 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTCG---CTGAGC 1455869 ||||||||||| || || || || |||| | | |||| | || | | Sbjct 624617 TGGACCGCCGAAGAAGTAGATCTATCACAAGACAACCGCGATTGGGAGAACAGTCTCAAC 624676 Query 1455870 GACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCAT 1455929 |||| ||| || || |||||||| ||||||||||| ||| ||||| ||| ||| || || Sbjct 624677 GACGGCGAACGTCACTTCATCAAACACGTCCTCGC-TTTCTTCGCTGCCTCCGACGGTAT 624735 Query 1455930 CGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTT 1455989 ||| ||||| || || || || ||| || |||||| | | ||||| ||| Sbjct 624736 CGTTCTAGAGAATCTCGCATCTCGGTTCATGTCCGATGTCCAAGTCTCGGAGGCGCGTGC 624795 Query 1455990 GTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGAT 1456049 || ||||| ||||||||||| || || || || |||||||| | || || || | Sbjct 624796 TTTCTACGGTTTCCAGATCGCGATTGAGAATATACACTCTGAGATGTATAGTCTTCTTCT 624855 Query 1456050 CGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGT 1456109 ||| || ||| |||| ||| |||| ||||| ||||| || || || || ||| | Sbjct 624856 CGATACTTACATCAAAGACAACAAAGAGAGAGACCATCTCTTCCGTGCGATTGAGACGAT 624915 Query 1456110 GCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTC-G 1456168 || | || ||| || || | ||||||||||| |||||| || || ||| | Sbjct 624916 TCCTTGTGTCGCGAAGAAAGCTCAGTGGGCGATGAAATGGATCGAC-----GGATCTCAG 624970 Query 1456169 ACACTTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAG 1456227 || ||| || || || |||| | || || |||| || || ||||| ||||| || || Sbjct 624971 AC-CTTCGCTGAACGAATCGTTGCTTTCGCTTGCGTTGAAGGTATCTTCTTCTCCGGAAG 625029 Query 1456228 TTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGC- 1456286 ||||| ||||||| ||||| ||||| || || |||||||| || | |||| | Sbjct 625030 CTTCTGTTCCATCTTCTGGCTTAAGAAACGAGGACTCATGCCTGG--GTTAACTTTCTCA 625087 Query 1456287 AACGAATTTATCAGTCGCGACGAAG 1456311 |||||| | ||| ||| ||||||| Sbjct 625088 AACGAACTGATCTCTCGAGACGAAG 625112 >seq339 Length=148954 Score = 100 bits (110), Expect = 4e-15 Identities = 212/310 (68%), Gaps = 11/310 (4%) Strand=Plus/Plus Query 1456005 GATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAA 1456064 |||||| || || || |||||||| || | || || || |||| || ||| |||| Sbjct 22461 GATCGCGATTGAGAATATCCACTCCGAGATGTATAGTCTTCTCCTCGATACTTACATCAA 22520 Query 1456065 GGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAA 1456124 ||| |||| || || ||||| || || || || ||| | || | || ||| Sbjct 22521 AGACAACAAAGAGAGAGATCATCTCTTCCGTGCGATTGAAACGATCCCTTGCGTCGCGAA 22580 Query 1456125 AAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTC-GACACTTTGCCGAGCG 1456183 || || | ||||||||||| |||||| || || ||| ||| ||| || || || Sbjct 22581 GAAAGCTCAGTGGGCGATGAAATGGATCGAC-----GGATCTCAGAC-CTTCGCTGAACG 22634 Query 1456184 GCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTT 1456242 |||| | || || | || || || ||||| ||||| || || ||||| ||||||| Sbjct 22635 AATCGTTGCTTTCGCTTGTGTTGAAGGTATCTTCTTCTCCGGAAGCTTCTGTTCCATCTT 22694 Query 1456243 TTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGC-AACGAATTTATCAGT 1456301 ||||| ||||| || || |||||||| || | |||| | |||||||| ||| | Sbjct 22695 CTGGCTTAAGAAACGAGGACTCATGCCTGG--GTTAACTTTCTCAAACGAATTGATCTCT 22752 Query 1456302 CGCGACGAAG 1456311 || ||||||| Sbjct 22753 CGAGACGAAG 22762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177021645254132