Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq6872 109 6e-19 seq353 109 6e-19 >seq6872 Length=15469 Score = 109 bits (120), Expect = 6e-19 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 158807 TGACGGCGATCAAGTTATTCAGTGTGAGTCCGATCAGTACATTCTAGACGCTGCAGAAGA 158866 ||| || || |||| || ||||||| ||| ||| |||| |||||||| || || Sbjct 14855 TGAAGGTGAGCAAGAGGTTGAGTGTGACGACGACGTCTACGTTCTTGACGCTGCTGAGGA 14796 Query 158867 GGCAGGAGTTGATATTAACTATTCCTGTCGTGCTGGTGCCTGTTCTTCCTGTGCTGGTAA 158926 || ||| | ||| | || || || ||||||||| | ||||| |||||||||||| Sbjct 14795 AGCTGGAATCGATTTGCCTTACTCTTGCCGTGCTGGTTCTTGTTCGAGCTGTGCTGGTAA 14736 Query 158927 ACTTGTCAGCGGAACTGTTGACCAAAGCGATCAGTCATTCTTGGATGATGATCAGATTGC 158986 | |||| ||| |||||||||| || ||| ||| | |||||||| ||||||| Sbjct 14735 AGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGTTTCCTTGATGATGAGCAGATTGA 14676 Query 158987 AGAAGGATTTATCCTTACGTGTGTATCTTATCCCACTTCTGAT 159029 | ||| ||| | || || |||| ||||||| || |||||| Sbjct 14675 TGCAGGGTTTGTTCTCACCTGTGCCGCTTATCCTACCTCTGAT 14633 >seq353 Length=447834 Score = 109 bits (120), Expect = 6e-19 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 158807 TGACGGCGATCAAGTTATTCAGTGTGAGTCCGATCAGTACATTCTAGACGCTGCAGAAGA 158866 ||| || || |||| || ||||||| ||| ||| |||| |||||||| || || Sbjct 266796 TGAAGGTGAGCAAGAGGTTGAGTGTGACGACGACGTCTACGTTCTTGACGCTGCTGAGGA 266855 Query 158867 GGCAGGAGTTGATATTAACTATTCCTGTCGTGCTGGTGCCTGTTCTTCCTGTGCTGGTAA 158926 || ||| | ||| | || || || ||||||||| | ||||| |||||||||||| Sbjct 266856 AGCTGGAATCGATTTGCCTTACTCTTGCCGTGCTGGTTCTTGTTCGAGCTGTGCTGGTAA 266915 Query 158927 ACTTGTCAGCGGAACTGTTGACCAAAGCGATCAGTCATTCTTGGATGATGATCAGATTGC 158986 | |||| ||| |||||||||| || ||| ||| | |||||||| ||||||| Sbjct 266916 AGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGTTTCCTTGATGATGAGCAGATTGA 266975 Query 158987 AGAAGGATTTATCCTTACGTGTGTATCTTATCCCACTTCTGAT 159029 | ||| ||| | || || |||| ||||||| || |||||| Sbjct 266976 TGCAGGGTTTGTTCTCACCTGTGCCGCTTATCCTACCTCTGAT 267018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572965365319200