Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq6872 105 7e-18 seq353 105 7e-18 seq351 105 7e-18 >seq6872 Length=15469 Score = 105 bits (116), Expect = 7e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 161089 TGAAGGTAACCAAGTTGTTCAATGTGAACCAGACCAGTACATTTTAGATGCAGCAGAAGA 161148 ||||||| | |||| ||| | ||||| ||| ||| || | || || || || || Sbjct 14855 TGAAGGTGAGCAAGAGGTTGAGTGTGACGACGACGTCTACGTTCTTGACGCTGCTGAGGA 14796 Query 161149 GGCAGGAGTTGATATTAACTATTCTTGTCGTGCTGGTGCTTGCTCTTCCTGTGCAGGTAA 161208 || ||| | ||| | || ||||| ||||||||| |||| || |||||| ||||| Sbjct 14795 AGCTGGAATCGATTTGCCTTACTCTTGCCGTGCTGGTTCTTGTTCGAGCTGTGCTGGTAA 14736 Query 161209 AATTATTTCAGGTACAGTAGACCAGTCTGACCAGTCCTTCTTGGATGATGACCAGATTGA 161268 | || | || || | || ||||||||||||||| ||| | |||||||| |||||||| Sbjct 14735 AGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGTTTCCTTGATGATGAGCAGATTGA 14676 Query 161269 ATCTGGATTCCTTTTGACATGTGTTGCATATCCTAC 161304 | || || || | || |||| || |||||||| Sbjct 14675 TGCAGGGTTTGTTCTCACCTGTGCCGCTTATCCTAC 14640 >seq353 Length=447834 Score = 105 bits (116), Expect = 7e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 161089 TGAAGGTAACCAAGTTGTTCAATGTGAACCAGACCAGTACATTTTAGATGCAGCAGAAGA 161148 ||||||| | |||| ||| | ||||| ||| ||| || | || || || || || Sbjct 266796 TGAAGGTGAGCAAGAGGTTGAGTGTGACGACGACGTCTACGTTCTTGACGCTGCTGAGGA 266855 Query 161149 GGCAGGAGTTGATATTAACTATTCTTGTCGTGCTGGTGCTTGCTCTTCCTGTGCAGGTAA 161208 || ||| | ||| | || ||||| ||||||||| |||| || |||||| ||||| Sbjct 266856 AGCTGGAATCGATTTGCCTTACTCTTGCCGTGCTGGTTCTTGTTCGAGCTGTGCTGGTAA 266915 Query 161209 AATTATTTCAGGTACAGTAGACCAGTCTGACCAGTCCTTCTTGGATGATGACCAGATTGA 161268 | || | || || | || ||||||||||||||| ||| | |||||||| |||||||| Sbjct 266916 AGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGTTTCCTTGATGATGAGCAGATTGA 266975 Query 161269 ATCTGGATTCCTTTTGACATGTGTTGCATATCCTAC 161304 | || || || | || |||| || |||||||| Sbjct 266976 TGCAGGGTTTGTTCTCACCTGTGCCGCTTATCCTAC 267011 >seq351 Length=837821 Score = 105 bits (116), Expect = 7e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 161089 TGAAGGTAACCAAGTTGTTCAATGTGAACCAGACCAGTACATTTTAGATGCAGCAGAAGA 161148 ||||||| | |||| ||| | ||||| ||| ||| || | ||||| || || || Sbjct 562198 TGAAGGTGAGCAAGAGGTTGAGTGTGACGACGACGTCTACGTTCTTGATGCTGCTGAGGA 562139 Query 161149 GGCAGGAGTTGATATTAACTATTCTTGTCGTGCTGGTGCTTGCTCTTCCTGTGCAGGTAA 161208 || ||| | ||| | || ||||| ||||||||| |||| || ||| || ||||| Sbjct 562138 AGCTGGAATCGATTTGCCTTACTCTTGCCGTGCTGGTTCTTGTTCGAGCTGCGCTGGTAA 562079 Query 161209 AATTATTTCAGGTACAGTAGACCAGTCTGACCAGTCCTTCTTGGATGATGACCAGATTGA 161268 | || | || || | || ||||||||||||||| ||| | |||||||| |||||||| Sbjct 562078 AGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGTTTCCTTGATGATGAGCAGATTGA 562019 Query 161269 ATCTGGATTCCTTTTGACATGTGTTGCATATCCTAC 161304 | || || || | || |||| || |||||||| Sbjct 562018 TGCAGGGTTTGTTCTCACCTGTGCCGCTTATCCTAC 561983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559446748753200