Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq6872 123 3e-23 seq353 123 3e-23 >seq6872 Length=15469 Score = 123 bits (136), Expect = 3e-23 Identities = 131/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 176352 CTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTCTTGTCGTGCTGGTGCTTGT 176411 |||||||||||||| ||||| || | ||| | ||||||||| ||||||||| ||||| Sbjct 14812 CTTGACGCTGCTGAGGAAGCTGGAATCGATTTGCCTTACTCTTGCCGTGCTGGTTCTTGT 14753 Query 176412 TCATCTTGTGCTGGCAAACTAGAGAGTGGTTCTGTTGATCAGAGTGATCAGTCTTTCCTG 176471 || |||||||| ||| | | | ||| |||||||| ||| ||| ||| |||||| Sbjct 14752 TCGAGCTGTGCTGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGTTTCCTT 14693 Query 176472 GATGATGATCAAATTGAATCTGGTTTTATTCTGACTTGCGTATCTTATCCTAC 176524 |||||||| || ||||| | || ||| |||| || || | |||||||||| Sbjct 14692 GATGATGAGCAGATTGATGCAGGGTTTGTTCTCACCTGTGCCGCTTATCCTAC 14640 >seq353 Length=447834 Score = 123 bits (136), Expect = 3e-23 Identities = 131/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 176352 CTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTCTTGTCGTGCTGGTGCTTGT 176411 |||||||||||||| ||||| || | ||| | ||||||||| ||||||||| ||||| Sbjct 266839 CTTGACGCTGCTGAGGAAGCTGGAATCGATTTGCCTTACTCTTGCCGTGCTGGTTCTTGT 266898 Query 176412 TCATCTTGTGCTGGCAAACTAGAGAGTGGTTCTGTTGATCAGAGTGATCAGTCTTTCCTG 176471 || |||||||| ||| | | | ||| |||||||| ||| ||| ||| |||||| Sbjct 266899 TCGAGCTGTGCTGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGTTTCCTT 266958 Query 176472 GATGATGATCAAATTGAATCTGGTTTTATTCTGACTTGCGTATCTTATCCTAC 176524 |||||||| || ||||| | || ||| |||| || || | |||||||||| Sbjct 266959 GATGATGAGCAGATTGATGCAGGGTTTGTTCTCACCTGTGCCGCTTATCCTAC 267011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605947590067680