Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq279 143 4e-29 seq127 131 2e-25 seq477 123 3e-23 seq191 123 3e-23 seq140 122 1e-22 seq126 87.8 2e-12 >seq279 Length=1218690 Score = 143 bits (158), Expect = 4e-29 Identities = 397/600 (66%), Gaps = 8/600 (1%) Strand=Plus/Minus Query 39613 TAAG-CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATG 39671 |||| || |||||||| || |||| ||| || |||| | || | |||||| || || | Sbjct 625139 TAAGACACGCGAAGTCGCAGTGTAAGCCTTCGTCTCGAGAGATCAGTTCGTTTGAGAAAG 625080 Query 39672 TGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAA 39730 | | |||||||| || || || || || ||||| || |||| | || ||| | || || Sbjct 625079 TTAACCCAGGCATGAGTCCTCGTTTCTTAAGCCAGAAGATGGAA-CAGAAGCTTCCGGAG 625021 Query 39731 AAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTA 39790 |||||||| ||||| || || || ||||| | || || || || | | || Sbjct 625020 AAGAAGATACCTTCAACGCAAGCGAAAGCAACGATTCGTTCAGCG-AAGGTCTGAGATCC 624962 Query 39791 -TGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGC 39849 | ||||| ||| ||||| | |||||||||| |||||||| || || || || || Sbjct 624961 GTCGATCCATTTCATCGCCCACTGAGCTTTCTTCGCGACACAAGGAATCGTCTCAATCGC 624902 Query 39850 ATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATA 39909 | ||||||| | | | || | | ||||| | || ||||| | | |||||||| Sbjct 624901 ACGGAAGAGATGGTCTCTCTCTTTGTTGTCTTTGATGTAAGTATCGAGAAGAAGACTATA 624842 Query 39910 CATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGT 39969 ||| || || || || || |||||||| ||||| || ||||| ||| | || || | Sbjct 624841 CATCTCAGAGTGTATATTCTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGA 624782 Query 39970 AATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGC 40029 | ||| || || || || | || | ||| || || || || || || Sbjct 624781 GACTTGGACATCGGACATGAACCGAGATGCGAGATTCTCTAGAACGATACCGTCGGAGGC 624722 Query 40030 GGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCG--GGTGTCAAT-TTATT 40086 || || || || | || ||||| || || | ||| || | || | | || | Sbjct 624721 AGCGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCGCCGTCGTTGAGACTGTTCTC 624662 Query 40087 CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGC 40146 ||| || | | |||| ||||| |||||||||||| || ||||| || || || || || Sbjct 624661 CCAATCGCGGTTGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAAGGATGCTTCGGC 624602 Query 40147 CTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGG 40206 || |||||||| | ||| || | | || || ||||| || ||| ||||| | ||| Sbjct 624601 TTTCTTGTACATCTCCCAGATCTGTGGGTAGTGGATTGGGAACATACAGAATCTGTCTGG 624542 >seq127 Length=1358402 Score = 131 bits (144), Expect = 2e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| || || | || | ||||| | ||| | || | |||||| |||| |||||| Sbjct 1059919 TCCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACC 1059978 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| | |||||||| ||| ||| |||||||| |||| || |||||| | || Sbjct 1059979 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCGGTTGCACGGATATTATGAGCTGA 1060038 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| || || ||||| |||| || | |||||| ||| | ||| |||||||| Sbjct 1060039 AACACCAATACCACCTGCAGATTTACTTATAACAGCACACTCTTTGAGTGTTTCATATAT 1060098 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||||| |||||||||||| ||||| | | ||||||||| Sbjct 1060099 GCCCTCAATGCTATCATCTTTCATGCACACCAAAAAACAGCT 1060140 Score = 100 bits (110), Expect = 4e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||||| || || || | ||||||||||| ||||| |||||| | | ||| | || || Sbjct 1060277 AGTTCCAGCGTTGAAGAGAGTAGGAGATGCATGAGTAAACCATCTCTGAGACATCAAATG 1060336 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 ||| |||| || || || || ||||| || ||||| || | || || | ||||| Sbjct 1060337 GTAAGTTTGGATTGCGGAATCAATATCATCCTTGTGAATGCCCACAGCTACCCTCATCAG 1060396 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| || ||||| | ||| || ||| | | ||| || ||||||||| | || || Sbjct 1060397 CATGTGTTGAGGCCTTTCAACAACTTTTCCTTGGACTTTTAAGAGGTATGATCTCTCAAG 1060456 Query 70170 AGTTTTAAACCCAAA 70184 ||||||||| ||||| Sbjct 1060457 AGTTTTAAATCCAAA 1060471 >seq477 Length=1203188 Score = 123 bits (136), Expect = 3e-23 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| || || | ||| | ||||| | ||| | || | |||||| |||| |||||| Sbjct 20440 TCCTCCTTGGTCAACGTAACGAGCAGTATCATTGAATACCCGCAGCATTGGAACAATACC 20381 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| || ||||| ||| ||| |||||||| | || ||||| || || || Sbjct 20380 ATTAGATGCTCCGTTTGTGCCACGAATGTAACTTCCAGTGGCACGAATGTTGTGAACTGA 20321 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 || ||| || || ||||| ||| || | |||||| |||||| |||||||| || Sbjct 20320 TACACCAATACCCCCTGCTGATTTGCTTATAACAGCACACTCTTTCAACGTGTCATAGAT 20261 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||| ||||||||||| ||||| | ||||| |||||| Sbjct 20260 TCCCTCGATGCTATCATCCTTCATGCAGATCAGAAAGCAGCTA 20218 >seq191 Length=957377 Score = 123 bits (136), Expect = 3e-23 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| || || | || | ||||| | ||| | || | |||||| |||| |||||| Sbjct 346558 TCCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACCCGCAGCATTGGAACAATACC 346499 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| || ||||| ||| ||| |||||||| |||| || || || || || Sbjct 346498 ATTAGATGCTCCGTTTGTGCCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAACTGA 346439 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 || ||| || || ||||| ||| || | |||||| |||||| ||||||||||| Sbjct 346438 TACACCGATACCCCCTGCTGATTTGCTTATAACAGCACACTCTTTCAACGTGTCATATAT 346379 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||| ||||||||||| ||||| | ||||| |||||| Sbjct 346378 TCCCTCGATGCTATCATCCTTCATGCAGATCAGAAAGCAGCTA 346336 >seq140 Length=1024829 Score = 122 bits (134), Expect = 1e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| || || | || | ||||| | ||| | || | |||||| |||| |||||| Sbjct 727284 TCCTCCTTGGTCGACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACC 727343 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 |||||| | |||||||| ||| ||| |||||||| |||| ||||||||| || || Sbjct 727344 GTTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGAATATTATGAACTGA 727403 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| || || || || ||| || | |||||| ||| | ||| |||||||| Sbjct 727404 AACACCAATACCGCCGGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATAT 727463 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 || || |||||||||||| ||||| | ||||| ||||| Sbjct 727464 GCCTTCAATGCTATCATCTTTCATGCACACCAGAAAGCAGCT 727505 Score = 93.3 bits (102), Expect = 6e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| || || || | ||||||||||| ||||| |||||| | | ||| | || || | Sbjct 727611 GTTCCAGCGTTGAAAAGAGTAGGAGATGCATGAGTAAACCATCTCTGAGACATCAAATGG 727670 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 ||||||| || || || || ||||| || ||||| || | || || | ||||| | Sbjct 727671 TATGTTTGGATTGCGGAGTCAATATCATCCTTGTGAATGCCAACAGCTACCCTCATCAGC 727730 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 || || ||||| | || || ||| | | ||| || ||||||||| | || ||| Sbjct 727731 ATGTGTTGAGGCCTCTCAACAACTTTCCCTTGGACTTTTAAGAGGTATGATCTCTCAAGA 727790 Query 70171 GTTTTAAACCCAAA 70184 |||||||| || || Sbjct 727791 GTTTTAAATCCGAA 727804 >seq126 Length=830300 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| || || | || | ||||| | ||| | || | |||||| |||| |||||| Sbjct 568397 TCCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACC 568456 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| | |||||||| ||| ||| |||||||| |||| ||||||||| || || Sbjct 568457 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGAATATTATGAACTGA 568516 Query 69870 TAGACCTATTCCTCCTGC 69887 | ||| || || || || Sbjct 568517 AACACCAATACCGCCAGC 568534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686838512057040