Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq339 109 4e-19 >seq339 Length=148954 Score = 109 bits (120), Expect = 4e-19 Identities = 220/324 (68%), Gaps = 2/324 (1%) Strand=Plus/Plus Query 43958 ATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAA 44017 || || || || ||||| || || || ||||| |||||||| | ||||| ||||||||| Sbjct 22462 ATCGCGATTGAGAATATCCACTCCGAGATGTATAGTCTTCTCCTCGATACTTACATCAAA 22521 Query 44018 GATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCT-GCGATTAAACA 44076 || | |||| ||| | || |||||| ||||| | ||| ||| | | Sbjct 22522 GACAACAAAGAGAGAGATCATCTCTTCCGTGCGATTGAAACGATCCCTTGCGTCGCGA-A 22580 Query 44077 TAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGT 44136 ||||| | ||||| | |||||||| | | | | | || | |||||| | || Sbjct 22581 GAAAGCTCAGTGGGCGATGAAATGGATCGACGGATCTCAGACCTTCGCTGAACGAATCGT 22640 Query 44137 CGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTT 44196 || || || ||| ||||| || ||||| || ||| || |||| || ||| | Sbjct 22641 TGCTTTCGCTTGTGTTGAAGGTATCTTCTTCTCCGGAAGCTTCTGTTCCATCTTCTGGCT 22700 Query 44197 AAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGA 44256 ||||||||||| | ||||||||||| || || ||||| || || || ||| || || Sbjct 22701 TAAGAAACGAGGACTCATGCCTGGGTTAACTTTCTCAAACGAATTGATCTCTCGAGACGA 22760 Query 44257 AGGCTTACATTGCGATTTTGCTTG 44280 ||||||||| ||||| || || || Sbjct 22761 AGGCTTACACTGCGACTTCGCGTG 22784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397416347056930