Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq279 100 9e-16 seq339 96.9 1e-14 >seq279 Length=1218690 Score = 100 bits (110), Expect = 9e-16 Identities = 134/184 (73%), Gaps = 3/184 (2%) Strand=Plus/Plus Query 443692 ATCTCAG--CTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAG 443749 ||||||| ||||| || ||| | || ||||| ||| || ||||| | || || Sbjct 624964 ATCTCAGACCTTCGCTGAACGAATCGTTGCTTTCGCTTGCGTTGAAGGTATCTTCTTCTC 625023 Query 443750 CGGCAGCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCT 443809 ||| ||||| | |||||||||||| | || || || ||||| |||| || | || | Sbjct 625024 CGGAAGCTTCTGT-TCCATCTTCTGGCTTAAGAAACGAGGACTCATGCCTGGGTTAACTT 625082 Query 443810 TTAGTAACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCT 443869 | |||||||||||| ||| ||||| || || || ||||||||||| |||||| ||| Sbjct 625083 TCTCAAACGAACTGATCTCTCGAGACGAAGGCTTACACTGCGACTTCGCGTGTCTTATCT 625142 Query 443870 ACAC 443873 |||| Sbjct 625143 ACAC 625146 >seq339 Length=148954 Score = 96.9 bits (106), Expect = 1e-14 Identities = 133/184 (72%), Gaps = 3/184 (2%) Strand=Plus/Plus Query 443692 ATCTCAG--CTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAG 443749 ||||||| ||||| || ||| | || ||||| ||| || ||||| | || || Sbjct 22614 ATCTCAGACCTTCGCTGAACGAATCGTTGCTTTCGCTTGTGTTGAAGGTATCTTCTTCTC 22673 Query 443750 CGGCAGCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCT 443809 ||| ||||| | |||||||||||| | || || || ||||| |||| || | || | Sbjct 22674 CGGAAGCTTCTGT-TCCATCTTCTGGCTTAAGAAACGAGGACTCATGCCTGGGTTAACTT 22732 Query 443810 TTAGTAACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCT 443869 | |||||| ||||| ||| ||||| || || || ||||||||||| |||||| ||| Sbjct 22733 TCTCAAACGAATTGATCTCTCGAGACGAAGGCTTACACTGCGACTTCGCGTGTCTTATCT 22792 Query 443870 ACAC 443873 |||| Sbjct 22793 ACAC 22796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588169410356770