Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq475 149 8e-31 seq464 149 8e-31 seq358 149 8e-31 seq299 140 4e-28 seq120 113 6e-20 seq149 104 3e-17 seq279 102 1e-16 seq339 100 4e-16 >seq475 Length=165231 Score = 149 bits (164), Expect = 8e-31 Identities = 204/281 (73%), Gaps = 8/281 (3%) Strand=Plus/Minus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || | || |||||||| || |||||||||||||||||| || Sbjct 6269 AAATCCATCCATCTCTGTCAACAACTGATTAATGGTCTGTTCTCTCTCATCATTTCCT-- 6212 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | ||| ||||| | | ||| | ||||| || ||||||||||||||||| |||||| Sbjct 6211 CCTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCGTCAATCTCATCAATGAATACAATA 6152 Query 11657 CATGGTTGATTTTCGCG--GGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACAC 11714 || || | ||||| ||| | || || | ||| | ||| || |||||||||| Sbjct 6151 CAAGG--GGCTTTCGACTTGGCCTTCTCGAACAAATCCCTAACTCTAGATGCACCCACAC 6094 Query 11715 CAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCAC 11774 | || || | ||||||||| | || ||| | ||| || ||| || || || ||| | Sbjct 6093 CCACGAAAAGCTCCACAAACTCTGAGGCGGCGCAAGAGAAGAACGGTACTCCTGCTTCCC 6034 Query 11775 CCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGC 11815 | || | || | ||| | ||||||||| |||||||| ||| Sbjct 6033 CAGCCACCGCCCTGGCCAAGAGGGTCTTACCCGTACCAGGC 5993 >seq464 Length=218172 Score = 149 bits (164), Expect = 8e-31 Identities = 282/414 (68%), Gaps = 6/414 (1%) Strand=Plus/Plus Query 11482 ATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAA 11541 |||||| || || | | ||| || || |||| || | || ||||| | | ||||| Sbjct 74524 ATCAAGAATGTCTGCTCTATTGGTTGCAGCAACTACGATAACACCAGTGTTACCTTCAAA 74583 Query 11542 GCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCAT 11601 ||||||||||| || || | ||||| | || |||||||| |||||||| || Sbjct 74584 ACCATCCATCTCAGTTAGGAGCTGATTGAGGGTCTGTTCTCTTTCATCATTACCTCC--- 74640 Query 11602 ACCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACA 11658 |||| || | | | |||| |||| || ||||| || ||||| | |||||||| || Sbjct 74641 ACCAATTCCGGTCCCTCTTTGCCTGCCGACAGCATCTATTTCATCTACAAAGACAATGCA 74700 Query 11659 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAAC 11718 || ||| || ||| | | || ||||| || || ||| |||||| ||||| || Sbjct 74701 AGGAGCATTCTCCTTGGCTTTCTTGAAAAGATCACGGACTCTTGAGGCACCGACACCGAC 74760 Query 11719 AAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGC 11778 ||||||||| ||||| | | ||||| || ||| || ||| | |||||| || Sbjct 74761 AAACATCTCAACAAACTCAGAACCAGAGATGGAGAAGAAAGGCACACCAGCTTCACCAGC 74820 Query 11779 GATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCG 11838 |||||| || | ||||| || || ||||| || ||| || || | ||| Sbjct 74821 AATGGCTTTTGCCAAAAGGGTTTTCCCGGTACCAGGAGGACCAATCAGGAGAACACCTTT 74880 Query 11839 GGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCAC 11892 |||||||||||||||| || |||||||||||| ||| ||||| ||||| Sbjct 74881 GGGGATCTTGGCACCAACCGCAGTGAATCTCTCGGGTTTCTTCAGAAACTCCAC 74934 >seq358 Length=878959 Score = 149 bits (164), Expect = 8e-31 Identities = 282/414 (68%), Gaps = 6/414 (1%) Strand=Plus/Minus Query 11482 ATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAA 11541 |||||| || || | | ||| || || |||| || | || ||||| | | ||||| Sbjct 821154 ATCAAGAATGTCTGCTCTATTGGTTGCAGCAACTACGATAACACCAGTGTTACCTTCAAA 821095 Query 11542 GCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCAT 11601 ||||||||||| || || | ||||| | || ||||||||||||||||| || Sbjct 821094 ACCATCCATCTCAGTTAGGAGCTGATTGAGGGTCTGTTCTCTCTCATCATTACCTCC--- 821038 Query 11602 ACCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACA 11658 |||| |||| | | |||| | || || ||||| || ||||| | |||||||| || Sbjct 821037 ACCAATTCCAGTCCCTCTTTGCCTACCGACAGCATCTATTTCATCTACAAAGACAATGCA 820978 Query 11659 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAAC 11718 || ||| || ||| | | || ||||| || || ||| |||||| ||||| || Sbjct 820977 AGGAGCATTCTCCTTGGCTTTCTTGAAAAGATCACGGACTCTTGAGGCACCGACACCGAC 820918 Query 11719 AAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGC 11778 ||||||||| ||||| | | ||||| || ||| |||||| | |||||| || Sbjct 820917 AAACATCTCAACAAACTCAGAACCAGAGATGGAGAAGAAAGGGACACCAGCTTCACCAGC 820858 Query 11779 GATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCG 11838 |||||| || | ||||| || || ||||| || ||| || || | ||| Sbjct 820857 AATGGCTTTTGCCAAAAGGGTTTTCCCGGTACCAGGAGGACCAATCAGGAGAACACCTTT 820798 Query 11839 GGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCAC 11892 ||||||||||||||| || | |||||||||| ||| ||||| ||||| Sbjct 820797 CGGGATCTTGGCACCAACCGCAGTGAACCTCTCGGGTTTCTTCAGAAACTCCAC 820744 >seq299 Length=980704 Score = 140 bits (154), Expect = 4e-28 Identities = 202/281 (72%), Gaps = 8/281 (3%) Strand=Plus/Minus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || | || |||||||| || |||||||||||||||||| || Sbjct 813047 AAATCCATCCATCTCTGTCAACAACTGATTAATGGTCTGTTCTCTCTCATCATTTCCT-- 812990 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | ||| ||||| | | ||| | ||||| || ||||||||||||||||| || ||| Sbjct 812989 CCTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCGTCAATCTCATCAATGAAAACGATA 812930 Query 11657 CATGGTTGATTTTCGCGG--GCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACAC 11714 || || | ||||| || | || || | ||| | ||| || |||||||||| Sbjct 812929 CAAGG--GGCTTTCGACTTAGCCTTCTCGAACAAATCCCTAACTCTAGATGCACCCACAC 812872 Query 11715 CAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCAC 11774 | || || | ||||||||| | || ||| | ||| || ||| || || || ||| | Sbjct 812871 CCACGAAAAGCTCCACAAACTCTGAGGCGGCGCAAGAGAAGAACGGTACTCCTGCTTCCC 812812 Query 11775 CCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGC 11815 | || | || | ||| | ||||||||| |||||||| ||| Sbjct 812811 CAGCCACCGCCCTGGCCAAGAGGGTCTTACCCGTACCAGGC 812771 >seq120 Length=809644 Score = 113 bits (124), Expect = 6e-20 Identities = 293/445 (66%), Gaps = 4/445 (1%) Strand=Plus/Minus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 || ||||| || || || | || | ||| ||||| || || | | || || || Sbjct 3550 CGGTCAAACCGCCCTGGTCTTAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 3491 Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569 |||| || | || ||||| | | ||||| ||||||||||| || || | |||||| Sbjct 3490 GCAACTACGATAACACCAGTGTTACCCTCAAAACCATCCATCTCAGTCAGAAGCTGATTA 3431 Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGCTTGCCCACC 11629 | || |||||||| |||||||| || | ||||| | | |||| | || || Sbjct 3430 AGGGTCTGTTCTCTTTCATCATTACCTCCACCAATACCAGTTCCTCTTTGCCTACCAACA 3371 Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 11689 ||||| || ||||| | || || || || || ||| || || ||| || ||| Sbjct 3370 GCATCTATTTCATCCACAAAAACTATGCACGGAGCATTCTCTTTTGCTTTTTTGAAAAGA 3311 Query 11690 TCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCAC 11749 || || |||||| ||||| ||||| ||||||||||| ||||| | | | ||| Sbjct 3310 TCACGGACCCTTGATGCACCAACACCGACAAACATCTCAACAAACTCAGAACCCGAG--A 3253 Query 11750 TGG--ATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCG 11807 ||| | ||| || ||| | |||||| || || ||| || | ||||| || || | Sbjct 3252 TGGAAAAGAAGGGTACACCAGCTTCACCAGCAATAGCTTTTGCCAACAGGGTTTTACCAG 3193 Query 11808 TACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAATATC 11867 |||| || ||| || || | ||| ||||||| ||||||| || | | | Sbjct 3192 TACCAGGAGGACCTATAAGGAGAACACCTTTGGGGATCCGGGCACCAACCGCAGTAAACC 3133 Query 11868 TCTCGGGTTGCTTGAGAAAATCCAC 11892 |||| || | ||| ||||| ||||| Sbjct 3132 TCTCAGGCTTCTTCAGAAACTCCAC 3108 >seq149 Length=1704810 Score = 104 bits (114), Expect = 3e-17 Identities = 274/415 (66%), Gaps = 10/415 (2%) Strand=Plus/Plus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| || || | | || || || |||| || | || ||||| | | ||||| Sbjct 889500 TCAAGAATGTCTGCTCTGTTGGTTGCAGCAACTACAATAACACCAGTGTTACCCTCAAAA 889559 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 ||||||||||| || || | ||||||| || |||||||| |||||||| || | Sbjct 889560 CCATCCATCTCAGTCAGAAGCTGATTAAGGGTCTGTTCTCTTTCATCATTACCTCC---A 889616 Query 11603 CCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACAT 11659 ||| || | | | |||| | || || ||||| || ||||| | || || || || Sbjct 889617 CCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCCACAAAAACTATGCAC 889676 Query 11660 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACA 11719 || ||| || || ||| || ||||| || |||||| ||||| ||||||||| Sbjct 889677 GGAGCATTCTCTTTTGCTTTTTTGAAAAGATCACGGACCCTTGATGCACCAACACCAACA 889736 Query 11720 AACATCTCCACAAAGTTTGCGGCAGAGCACTGG--ATGAATGGGACATTTGATTCACCCG 11777 |||||||| ||||| | | | ||| ||| | ||| || ||| | |||||| | Sbjct 889737 AACATCTCAACAAACTCAGAACCCGAG--ATGGAAAAGAAGGGTACACCAGCTTCACCAG 889794 Query 11778 CGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTC 11837 | || ||| || | ||||| || || ||||| || ||| || || | ||| Sbjct 889795 CAATAGCTTTTGCCAACAGGGTTTTACCAGTACCAGGAGGACCTATAAGGAGAACACCTT 889854 Query 11838 GGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCAC 11892 ||||||| ||| ||| || | | ||||| || | ||| ||||| ||||| Sbjct 889855 TGGGGATCCGGGCTCCAACCGCAGTAAACCTCTCAGGCTTCTTCAGAAACTCCAC 889909 >seq279 Length=1218690 Score = 102 bits (112), Expect = 1e-16 Identities = 143/200 (72%), Gaps = 3/200 (2%) Strand=Plus/Minus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 || || ||||| || || ||||| |||||||| || || |||||||| || || ||| Sbjct 625113 CCTTCGTCTCGAGAGATCAGTTCGTTTGAGAAAGTTAACCCAGGCATGAGTCCTCGTTTC 625054 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 || | ||| | || | ||||| ||||||||||||||||| || || || || || Sbjct 625053 TTAAGCCAGAAGATGGAACAGAAGCTTCCGGAGAAGAAGATACCTTCAACGCAAGCGAAA 624994 Query 122797 GCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGCCCATTTC 122856 |||| | ||||| ||||||| |||| | | || | ||||||||| ||||| | Sbjct 624993 GCAACGATTCGTTCAGCGAAGGTCTGAGA---TCCGTCGATCCATTTCATCGCCCACTGA 624937 Query 122857 GCCTTCTTCTCAATACATGG 122876 || |||||| | | ||| || Sbjct 624936 GCTTTCTTCGCGACACAAGG 624917 >seq339 Length=148954 Score = 100 bits (110), Expect = 4e-16 Identities = 136/189 (72%), Gaps = 3/189 (2%) Strand=Plus/Minus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 || || ||||| || || | ||| |||||||| || || |||||||| || || ||| Sbjct 22763 CCTTCGTCTCGAGAGATCAATTCGTTTGAGAAAGTTAACCCAGGCATGAGTCCTCGTTTC 22704 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 || | ||| | || | ||||| ||||||||||||||||| || ||||| || || Sbjct 22703 TTAAGCCAGAAGATGGAACAGAAGCTTCCGGAGAAGAAGATACCTTCAACACAAGCGAAA 22644 Query 122797 GCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGCCCATTTC 122856 |||| | ||||| ||||||| |||| | | || | ||||||||| ||||| | Sbjct 22643 GCAACGATTCGTTCAGCGAAGGTCTGAGA---TCCGTCGATCCATTTCATCGCCCACTGA 22587 Query 122857 GCCTTCTTC 122865 || |||||| Sbjct 22586 GCTTTCTTC 22578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627967736625600