Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq279 111 2e-19 seq358 109 7e-19 seq339 107 2e-18 seq299 98.7 1e-15 seq475 95.1 1e-14 seq120 84.2 3e-11 >seq279 Length=1218690 Score = 111 bits (122), Expect = 2e-19 Identities = 378/574 (66%), Gaps = 19/574 (3%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCT-GATATTCTCCAT 129786 || || ||||| || |||||||||||||| |||||||| | |||| |||| ||||| Sbjct 625419 TAATCGCCAACGCGTTTCTCGAAGAAGTTGGTCTTCCCTTG-AAGCGAGATAAGTTCCAT 625361 Query 129787 AAAATCAAATGGGTTCTTTGAGT--TCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGA 129844 ||||||| || || | | || || | | || |||| | || || Sbjct 625360 CCAATCAAAAGGATTAGTCACACCGTACACCTTACCGT-AC-CCAAGCGCACCCAGAAGC 625303 Query 129845 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTA 129904 | ||||| || ||||||| |||| | |||| || |||||| || | | Sbjct 625302 CTATCCGCTACAAACTCAATATACTGACTCATCAAATCCTGGTTCATCCCAACCAACGCG 625243 Query 129905 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCG 129964 || || |||||||| | | ||| || |||| || |||||||| || | |||||| | Sbjct 625242 CAAGGAAGCGCGTCGCACACAAACTCCCTCTCGATCTCCACAGCGTCGCACACGATCGAC 625183 Query 129965 TGAATGGTCTCCGTGCCAGG--TC-TATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAAC 130021 | | | ||| || | | || | ||| | | || | || || |||| | || Sbjct 625182 TTCACGCGCTCTTCGCTAAGCTTCGTTTTGAGGAGTGTGTAGATAAGA--CACG-CGAAG 625126 Query 130022 TCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 130081 || ||| | || ||||| || ||||| ||||| || ||||| | || |||||| Sbjct 625125 TCGCAGTGTAAGCCTTCGTCTCGAGAGATCAGTTCGTTTGAGAAAGTTAACCCAGGCATG 625066 Query 130082 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 130141 || || || ||||| | |||||| || | ||| || || ||||||||||| || || Sbjct 625065 AGTCCTCGTTTCTTAAGCCAGAAGATGGAACAGAAGCTTCCGGAGAAGAAGATACCTTCA 625006 Query 130142 ACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTC 130201 || || ||||| |||| || || ||||| |||| | || | || | ||| ||| Sbjct 625005 ACGCAAGCGAAAGCAACGATTCGTTCAGCGAAGGTCTGAGA---TCCGTCGATCCATTTC 624949 Query 130202 ATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCC 130261 ||||||||||| || || ||| ||| ||| || | |||| ||||| ||||| | Sbjct 624948 ATCGCCCACTGAGCTTTCTTCGCGACACAAGGAATCGTCTCAATCGCACGGAAGAGATGG 624889 Query 130262 T-TCT-TTTCTGATGGATCTTTGATGTACTTATC 130293 | ||| | | || || ||||||||||| |||| Sbjct 624888 TCTCTCTCTTTGTTG--TCTTTGATGTAAGTATC 624857 >seq358 Length=878959 Score = 109 bits (120), Expect = 7e-19 Identities = 198/283 (70%), Gaps = 10/283 (4%) Strand=Plus/Minus Query 14150 TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGC- 14208 ||||| |||||||||||||| | ||| ||||||| ||| ||||| | |||||||| | Sbjct 821099 TCAAAACCATCCATCTCAGTTAGGAGCTGATTGAGGGTCTGTTCTCTCTCATCATTACCT 821040 Query 14209 --AGGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACG 14266 | || ||| | | || |||| ||||||| || || |||||||| | || || Sbjct 821039 CCACCAATTCCAGTCCCTCT---TTGCCTACCGACAGCATCTATTTCATCTACAAAGACA 820983 Query 14267 ATACATGGTTGATTTTCACGGGCAA-CTTCAAAGATATCTCGCACTCTCTTGGCACCGAC 14325 || || || ||| || ||| ||| ||| | ||| || ||||| ||||||||| Sbjct 820982 ATGCAAGGAGCATTCTCCTTGGCTTTCTTGAAA-AGATCACGGACTCTTGAGGCACCGAC 820924 Query 14326 ACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATT 14384 ||| ||||||||||| ||||| | | | | | || | || ||| ||||| || || Sbjct 820923 ACCGACAAACATCTCAACAAACTCAGAACCAG-AGATGGAGAAGAAAGGGACACCAGCTT 820865 Query 14385 CACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 |||| || |||||| || | ||||| ||||| || || || Sbjct 820864 CACCAGCAATGGCTTTTGCCAAAAGGGTTTTCCCGGTACCAGG 820822 >seq339 Length=148954 Score = 107 bits (118), Expect = 2e-18 Identities = 187/268 (70%), Gaps = 7/268 (3%) Strand=Plus/Minus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 || ||||| || ||||| | ||| || ||||| | || |||||||| || || ||| Sbjct 22763 CCTTCGTCTCGAGAGATCAATTCGTTTGAGAAAGTTAACCCAGGCATGAGTCCTCGTTTC 22704 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 || | |||||| || | ||| || || ||||||||||| || || ||||| ||||| Sbjct 22703 TTAAGCCAGAAGATGGAACAGAAGCTTCCGGAGAAGAAGATACCTTCAACACAAGCGAAA 22644 Query 130154 GCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGC 130213 |||| || || ||||| |||| | || | || | ||| |||||||||||||| Sbjct 22643 GCAACGATTCGTTCAGCGAAGGTCTGAGA---TCCGTCGATCCATTTCATCGCCCACTGA 22587 Query 130214 GCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCT-TTTCTG 130271 || || ||| ||| || |||| || | ||||| ||||| | | ||| | | || Sbjct 22586 GCTTTCTTCGCGACGCAAGGGATCGTTTCAATCGCACGGAAGAGATGATCTCTCTCTTTG 22527 Query 130272 ATGGATCTTTGATGTACTTATCTATGAG 130299 || ||||||||||| |||| | ||| Sbjct 22526 TTG--TCTTTGATGTAAGTATCGAGGAG 22501 >seq299 Length=980704 Score = 98.7 bits (108), Expect = 1e-15 Identities = 192/279 (69%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||| ||||||||||| ||||| | ||||| ||||| ||||| | |||||||| | Sbjct 813047 AAATCCATCCATCTCTGTCAACAACTGATTAATGGTCTGTTCTCTCTCATCATTTCC--T 812990 Query 14212 CATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 14269 | | ||| || || | | ||| | || || |||||||| ||||| |||||||||||| Sbjct 812989 CCTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCGTCAATCTCATCAATGAAAACGATA 812930 Query 14270 CATGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 14328 || || | ||| || || || || | ||| | ||||| ||||| ||||| Sbjct 812929 CAAGG-GGCTTTCGACTTAGCCTTCTCGAACAAATCCCTAACTCTAGATGCACCCACACC 812871 Query 14329 CACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACC 14388 ||| || | ||||||||| | | ||||| || || ||| || || | ||| || Sbjct 812870 CACGAAAAGCTCCACAAACTCTGAGGCGGCGCAAGAGAAGAACGGTACTCCTGCTTCCCC 812811 Query 14389 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 || | || | ||| | ||||||||| ||||| || || Sbjct 812810 AGCCACCGCCCTGGCCAAGAGGGTCTTACCCGTACCAGG 812772 >seq475 Length=165231 Score = 95.1 bits (104), Expect = 1e-14 Identities = 191/279 (68%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||| ||||||||||| ||||| | ||||| ||||| ||||| | |||||||| | Sbjct 6269 AAATCCATCCATCTCTGTCAACAACTGATTAATGGTCTGTTCTCTCTCATCATTTCC--T 6212 Query 14212 CATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 14269 | | ||| || || | | ||| | || || |||||||| ||||| ||||| || ||| Sbjct 6211 CCTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCGTCAATCTCATCAATGAATACAATA 6152 Query 14270 CATGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 14328 || || | ||| || ||| || || | ||| | ||||| ||||| ||||| Sbjct 6151 CAAGG-GGCTTTCGACTTGGCCTTCTCGAACAAATCCCTAACTCTAGATGCACCCACACC 6093 Query 14329 CACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACC 14388 ||| || | ||||||||| | | ||||| || || ||| || || | ||| || Sbjct 6092 CACGAAAAGCTCCACAAACTCTGAGGCGGCGCAAGAGAAGAACGGTACTCCTGCTTCCCC 6033 Query 14389 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 || | || | ||| | ||||||||| ||||| || || Sbjct 6032 AGCCACCGCCCTGGCCAAGAGGGTCTTACCCGTACCAGG 5994 >seq120 Length=809644 Score = 84.2 bits (92), Expect = 3e-11 Identities = 214/322 (66%), Gaps = 8/322 (2%) Strand=Plus/Minus Query 14150 TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT---C 14206 ||||| |||||||||||||||| || ||||| | ||| ||||| | ||||||||| Sbjct 3463 TCAAAACCATCCATCTCAGTCAGAAGCTGATTAAGGGTCTGTTCTCTTTCATCATTACCT 3404 Query 14207 GCAGGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACG 14266 || |||||| | | | |||| |||| || || || |||||||| | ||||| Sbjct 3403 CCACCAATACCA---GTTCCTCTTTGCCTACCAACAGCATCTATTTCATCCACAAAAACT 3347 Query 14267 ATACATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACA 14326 || || || ||| || || || || | ||| || || || ||||| ||| Sbjct 3346 ATGCACGGAGCATTCTCTTTTGCTTTTTTGAAAAGATCACGGACCCTTGATGCACCAACA 3287 Query 14327 CCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTC 14385 || ||||||||||| ||||| | | | | | || | | |||||| || || ||| Sbjct 3286 CCGACAAACATCTCAACAAACTCAGAACCCG-AGATGGAAAAGAAGGGTACACCAGCTTC 3228 Query 14386 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGC 14445 ||| || || ||| || | ||||| || || || || || ||| || || | Sbjct 3227 ACCAGCAATAGCTTTTGCCAACAGGGTTTTACCAGTACCAGGAGGACCTATAAGGAGAAC 3168 Query 14446 ACCACGTGGGATCCTGGCACCA 14467 ||| ||||||| ||||||| Sbjct 3167 ACCTTTGGGGATCCGGGCACCA 3146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618371918618160