Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq464 120 4e-22 seq358 120 4e-22 seq299 114 2e-20 seq120 111 2e-19 seq149 109 6e-19 seq475 107 2e-18 seq339 104 3e-17 seq279 104 3e-17 >seq464 Length=218172 Score = 120 bits (132), Expect = 4e-22 Identities = 303/454 (67%), Gaps = 10/454 (2%) Strand=Plus/Plus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 |||||||| || ||||| | | | || |||||| || || | | ||| || || Sbjct 74492 CGATCAAACCGTCCTGGCCTCAACAAAGCAGAATCAAGAATGTCTGCTCTATTGGTTGCA 74551 Query 9584 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 || | || | || ||| || | | ||||||||||||||||| || | || || || Sbjct 74552 GCAACTACGATAACACCAGTGTTACCTTCAAAACCATCCATCTCAGTTAGGAGCTGATTG 74611 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 9700 | || ||||| | ||||||||| || |||| || | | | |||| | || Sbjct 74612 AGGGTCTGTTCTCTTTCATCATTACCT---CCACCAATTCCGGTCCCTCTTTGCCTGCCG 74668 Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGC-GACTTCAAA 9759 || ||||| || ||||| | ||||| ||||| || ||| || || ||| ||| Sbjct 74669 ACAGCATCTATTTCATCTACAAAGACAATGCAAGGAGCATTCTCCTTGGCTTTCTTGAAA 74728 Query 9760 GAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 9819 ||||| || || | ||| || ||||| ||||||||||| ||||| | | | | Sbjct 74729 -AGATCACGGACTCTTGAGGCACCGACACCGACAAACATCTCAACAAACTCAGAACCAG- 74786 Query 9820 ACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 9878 | || | || ||| || ||| || |||||| ||||||||| || | ||| || || | Sbjct 74787 AGATGGAGAAGAAAGGCACACCAGCTTCACCAGCAATGGCTTTTGCCAAAAGGGTTTTCC 74846 Query 9879 CCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGT 9938 | ||||| || ||| ||||| ||||| || |||||||| ||| || | Sbjct 74847 CGGTACCAGGAGGACCAATCAGGAGAACACCTTTGGGGATCTTGGCACCAACCGCAGTGA 74906 Query 9939 ATCTCTCAGGTTGCTTAAGAAAATCCACAATTTC 9972 ||||||| |||| ||| ||||| ||||| | ||| Sbjct 74907 ATCTCTCGGGTTTCTTCAGAAACTCCACCACTTC 74940 >seq358 Length=878959 Score = 120 bits (132), Expect = 4e-22 Identities = 303/454 (67%), Gaps = 10/454 (2%) Strand=Plus/Minus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 |||||||| || ||||| | | | || |||||| || || | | ||| || || Sbjct 821186 CGATCAAACCGTCCTGGCCTCAACAAAGCAGAATCAAGAATGTCTGCTCTATTGGTTGCA 821127 Query 9584 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 || | || | || ||| || | | ||||||||||||||||| || | || || || Sbjct 821126 GCAACTACGATAACACCAGTGTTACCTTCAAAACCATCCATCTCAGTTAGGAGCTGATTG 821067 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 9700 | || ||||| | |||||||| || |||| |||| | | |||| | || Sbjct 821066 AGGGTCTGTTCTCTCTCATCATTACCT---CCACCAATTCCAGTCCCTCTTTGCCTACCG 821010 Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGC-GACTTCAAA 9759 || ||||| || ||||| | ||||| ||||| || ||| || || ||| ||| Sbjct 821009 ACAGCATCTATTTCATCTACAAAGACAATGCAAGGAGCATTCTCCTTGGCTTTCTTGAAA 820950 Query 9760 GAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 9819 ||||| || || | ||| || ||||| ||||||||||| ||||| | | | | Sbjct 820949 -AGATCACGGACTCTTGAGGCACCGACACCGACAAACATCTCAACAAACTCAGAACCAG- 820892 Query 9820 ACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 9878 | || | || ||| |||||| || |||||| ||||||||| || | ||| || || | Sbjct 820891 AGATGGAGAAGAAAGGGACACCAGCTTCACCAGCAATGGCTTTTGCCAAAAGGGTTTTCC 820832 Query 9879 CCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGT 9938 | ||||| || ||| ||||| ||||| || |||||||| ||| || | Sbjct 820831 CGGTACCAGGAGGACCAATCAGGAGAACACCTTTCGGGATCTTGGCACCAACCGCAGTGA 820772 Query 9939 ATCTCTCAGGTTGCTTAAGAAAATCCACAATTTC 9972 | ||||| |||| ||| ||||| ||||| | ||| Sbjct 820771 ACCTCTCGGGTTTCTTCAGAAACTCCACCACTTC 820738 >seq299 Length=980704 Score = 114 bits (126), Expect = 2e-20 Identities = 255/375 (68%), Gaps = 12/375 (3%) Strand=Plus/Minus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| ||||||||||||||||| | || ||||| || ||||| | |||||||| || Sbjct 813047 AAATCCATCCATCTCTGTCAACAACTGATTAATGGTCTGTTCTCTCTCATCATTTCCT-- 812990 Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | | ||| ||||| | | ||| | ||||| || ||||||||||||||||| ||||| Sbjct 812989 CCTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCGTCAATCTCATCAATGAAAACGATA 812930 Query 9731 CATGGTTGATTTTCG--CGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 9786 || || | ||||| ||| || || | ||||| || || || | || ||||| Sbjct 812929 CAAGG--GGCTTTCGACTTAGCCTTCTCGAACAAATCCC-TA-ACTCTAGATGCACCCAC 812874 Query 9787 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9846 ||| || || | ||||||||| | || ||||| || || ||| || || | ||| Sbjct 812873 ACCCACGAAAAGCTCCACAAACTCTGAGGCGGCGCAAGAGAAGAACGGTACTCCTGCTTC 812814 Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 9906 || || | || | ||| | || |||||||||||||| ||| || | || | Sbjct 812813 CCCAGCCACCGCCCTGGCCAAGAGGGTCTTACCCGTACCAGGCGGTCCAACAAGCAAACA 812754 Query 9907 ACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 9966 ||| ||||||||||| || | ||| | ||||| | ||| | |||||||| Sbjct 812753 CCCTTTAGGAATCTTGGCACCCAAGGCTGTGTACTTATCAGGATTCTTCAAGAAATCCAC 812694 Query 9967 AATTTCTTCCAATTC 9981 || ||| | ||||| Sbjct 812693 AACTTCCTGTAATTC 812679 >seq120 Length=809644 Score = 111 bits (122), Expect = 2e-19 Identities = 301/454 (66%), Gaps = 10/454 (2%) Strand=Plus/Minus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 || ||||| || ||||| | || | ||| ||||| || || | | || || || Sbjct 3550 CGGTCAAACCGCCCTGGTCTTAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 3491 Query 9584 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 || | || | || ||| || | | ||||||||||||||||| |||| ||| || ||| Sbjct 3490 GCAACTACGATAACACCAGTGTTACCCTCAAAACCATCCATCTCAGTCAGAAGCTGATTA 3431 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACG 9703 | || ||||| | ||||||||| || | ||||| | | |||| | || || Sbjct 3430 AGGGTCTGTTCTCTTTCATCATTACCTCCACCAATACCAGTTCCTCTTTGCCTACCAACA 3371 Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGA 9763 ||||| || ||||| | || || ||||| || ||| || || || || ||| Sbjct 3370 GCATCTATTTCATCCACAAAAACTATGCACGGAGCATTCTCTTTTGCTTTTTTGAAAAGA 3311 Query 9764 TCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 9821 || || || |||| || || ||||| ||||||||||| ||||| | | | | | Sbjct 3310 TCACG--GACCCTTGATGCACCAACACCGACAAACATCTCAACAAACTCAGAACCCG-AG 3254 Query 9822 ATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9880 || | | |||||| ||| || |||||| ||||| ||| || | || || ||||| Sbjct 3253 ATGGAAAAGAAGGGTACACCAGCTTCACCAGCAATAGCTTTTGCCAACAGGGTTTTACCA 3194 Query 9881 GTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGT-- 9938 ||||| || ||| ||||| ||||| || ||| ||| ||| || ||| Sbjct 3193 GTACCAGGAGGACCTATAAGGAGAACACCTTTGGGGATCCGGGCACCA--ACCGCAGTAA 3136 Query 9939 ATCTCTCAGGTTGCTTAAGAAAATCCACAATTTC 9972 | |||||||| | ||| ||||| ||||| | ||| Sbjct 3135 ACCTCTCAGGCTTCTTCAGAAACTCCACCACTTC 3102 >seq149 Length=1704810 Score = 109 bits (120), Expect = 6e-19 Identities = 303/457 (66%), Gaps = 16/457 (4%) Strand=Plus/Plus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 || || || || ||||| | || | ||| ||||| || || | | || || || Sbjct 889467 CGGTCGAACCGCCCTGGTCTTAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 889526 Query 9584 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 || | |||| || ||| || | | ||||||||||||||||| |||| ||| || ||| Sbjct 889527 GCAACTACAATAACACCAGTGTTACCCTCAAAACCATCCATCTCAGTCAGAAGCTGATTA 889586 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 9700 | || ||||| | ||||||||| || |||| || | | | |||| | || Sbjct 889587 AGGGTCTGTTCTCTTTCATCATTACCT---CCACCAATTCCGGTTCCTCTTTGCCTACCA 889643 Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAG 9760 || ||||| || ||||| | || || ||||| || ||| || || || || Sbjct 889644 ACAGCATCTATTTCATCCACAAAAACTATGCACGGAGCATTCTCTTTTGCTTTTTTGAAA 889703 Query 9761 AGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 9818 ||||| || || |||| || || ||||||||||||||||| ||||| | | | | Sbjct 889704 AGATCACG--GACCCTTGATGCACCAACACCAACAAACATCTCAACAAACTCAGAACCCG 889761 Query 9819 AACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 9877 | || | | |||||| ||| || |||||| ||||| ||| || | || || ||| Sbjct 889762 -AGATGGAAAAGAAGGGTACACCAGCTTCACCAGCAATAGCTTTTGCCAACAGGGTTTTA 889820 Query 9878 CCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAG 9937 || ||||| || ||| ||||| ||||| || ||| ||| ||| || || Sbjct 889821 CCAGTACCAGGAGGACCTATAAGGAGAACACCTTTGGGGATCCGGGCTCCA--ACCGCAG 889878 Query 9938 T--ATCTCTCAGGTTGCTTAAGAAAATCCACAATTTC 9972 | | |||||||| | ||| ||||| ||||| | ||| Sbjct 889879 TAAACCTCTCAGGCTTCTTCAGAAACTCCACCACTTC 889915 >seq475 Length=165231 Score = 107 bits (118), Expect = 2e-18 Identities = 198/283 (70%), Gaps = 12/283 (4%) Strand=Plus/Minus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| ||||||||||||||||| | || ||||| || ||||| | |||||||| || Sbjct 6269 AAATCCATCCATCTCTGTCAACAACTGATTAATGGTCTGTTCTCTCTCATCATTTCCT-- 6212 Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | | ||| ||||| | | ||| | ||||| || ||||||||||||||||| || || Sbjct 6211 CCTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCGTCAATCTCATCAATGAATACAATA 6152 Query 9731 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 9786 || || | ||||| | || || || | ||||| || || || | || ||||| Sbjct 6151 CAAGG--GGCTTTCGACTTGGCCTTCTCGAACAAATCCC-TA-ACTCTAGATGCACCCAC 6096 Query 9787 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9846 ||| || || | ||||||||| | || ||||| || || ||| || || | ||| Sbjct 6095 ACCCACGAAAAGCTCCACAAACTCTGAGGCGGCGCAAGAGAAGAACGGTACTCCTGCTTC 6036 Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGC 9889 || || | || | ||| | || |||||||||||||| ||| Sbjct 6035 CCCAGCCACCGCCCTGGCCAAGAGGGTCTTACCCGTACCAGGC 5993 >seq339 Length=148954 Score = 104 bits (114), Expect = 3e-17 Identities = 136/188 (72%), Gaps = 3/188 (2%) Strand=Plus/Plus Query 94750 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGA 94809 |||||||| | ||||| ||||| ||| | || | || | |||| ||||| ||| Sbjct 22579 AAGAAAGCTCAGTGGGCGATGAAATGGATCGACGGA---TCTCAGACCTTCGCTGAACGA 22635 Query 94810 CTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTAT 94869 || | || || || |||||||| |||||||||||||| || |||||| | || | Sbjct 22636 ATCGTTGCTTTCGCTTGTGTTGAAGGTATCTTCTTCTCCGGAAGCTTCTGTTCCATCTTC 22695 Query 94870 TGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGT 94929 ||||| ||||| ||||| |||||||| || | ||||| ||||| | |||||||| Sbjct 22696 TGGCTTAAGAAACGAGGACTCATGCCTGGGTTAACTTTCTCAAACGAATTGATCTCTCGA 22755 Query 94930 GACGAGGG 94937 ||||| || Sbjct 22756 GACGAAGG 22763 >seq279 Length=1218690 Score = 104 bits (114), Expect = 3e-17 Identities = 136/188 (72%), Gaps = 3/188 (2%) Strand=Plus/Plus Query 94750 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGA 94809 |||||||| | ||||| ||||| ||| | || | || | |||| ||||| ||| Sbjct 624929 AAGAAAGCTCAGTGGGCGATGAAATGGATCGACGGA---TCTCAGACCTTCGCTGAACGA 624985 Query 94810 CTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTAT 94869 || | || || || || ||||| |||||||||||||| || |||||| | || | Sbjct 624986 ATCGTTGCTTTCGCTTGCGTTGAAGGTATCTTCTTCTCCGGAAGCTTCTGTTCCATCTTC 625045 Query 94870 TGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGT 94929 ||||| ||||| ||||| |||||||| || | ||||| ||||| || |||||||| Sbjct 625046 TGGCTTAAGAAACGAGGACTCATGCCTGGGTTAACTTTCTCAAACGAACTGATCTCTCGA 625105 Query 94930 GACGAGGG 94937 ||||| || Sbjct 625106 GACGAAGG 625113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583201117838640