Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq248 89.7 4e-13 seq674 84.2 2e-11 seq180 82.4 6e-11 >seq248 Length=403725 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/191 (71%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 111721 TGATTTAAATAAACATGCGCATCTCCTATACAATGGATCAATTCCCAAGGCTCCAAACCA 111780 |||||| || ||||| ||||| |||||| |||||| || || | ||| | | | Sbjct 23622 TGATTTCTGTACACATGAGCATCCCCTATAACATGGATAAAATCACCAGGAACGAGATTG 23563 Query 111781 GTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCT 111840 | || |||| |||| | || || ||| ||| |||||||||||| |||||||| Sbjct 23562 CACACATGAGCAAGCATGCAAGTAAGAAGAGCGTAGGAAGCAATGTTAAACGGCACACCA 23503 Query 111841 AGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACATAA 111900 |||||||| ||| | || | |||||| | ||||| || |||| || || |||||| Sbjct 23502 AGGCCCATGTCTGCTGAACGTTGATACATTTGACACGAGAGTTCCCCTTCTGCCACATAG 23443 Query 111901 AATTGACAAAG 111911 || || ||||| Sbjct 23442 AACTG-CAAAG 23433 >seq674 Length=261080 Score = 84.2 bits (92), Expect = 2e-11 Identities = 134/191 (70%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 111721 TGATTTAAATAAACATGCGCATCTCCTATACAATGGATCAATTCCCAAGGCTCCAAACCA 111780 |||||| || ||||| ||||| |||||| |||||| || || | ||| | | | Sbjct 144350 TGATTTCTGTACACATGAGCATCCCCTATAACATGGATAAAATCACCAGGAACGAGATTG 144409 Query 111781 GTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCT 111840 | || |||| |||| | || || ||| ||| |||||||||||| |||||||| Sbjct 144410 CACACATGAGCAAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCA 144469 Query 111841 AGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACATAA 111900 |||||||| ||| | || | |||||| | ||||| || |||| || || | |||| Sbjct 144470 AGGCCCATGTCTGCTGAACGTTGATACATTTGACACGAGAGTTCCCCTTCTGCCGCATAG 144529 Query 111901 AATTGACAAAG 111911 || || ||||| Sbjct 144530 AACTG-CAAAG 144539 >seq180 Length=4117863 Score = 82.4 bits (90), Expect = 6e-11 Identities = 187/280 (67%), Gaps = 5/280 (2%) Strand=Plus/Plus Query 111777 ACCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCAC 111836 |||| || ||| || | ||| |||| || ||| ||| |||||||||||||| || Sbjct 3608107 ACCACAGACGTGAGCGAGAATGCATGTAAGAAGAGAGTATGAGGCAATGTTAAATGGTAC 3608166 Query 111837 ACCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACAC 111896 ||| || |||||||| | || | ||||| | |||||||| |||| | || || Sbjct 3608167 ACCGAGACCCATATCGGCTGAGCGCTGATACATTTGACATGAAAGTTCTCCATTTGCAAC 3608226 Query 111897 ATAAAATTGACAAAGTACATGACAAGGAGGCAATGCCATCCCATTCATA----AAGGGTC 111952 |||||| ||| || | || || ||||| | ||||||| |||| | ||||| Sbjct 3608227 ATAAAACTGAGCAAACATGTGGCATGGAGGAAGTGCCATCAACTTCAGATCAGGAGGGT- 3608285 Query 111953 CCCATGCACACATGATCATCCTTCTGCTGTAGCGATTATGTTCAATGTCGTGTATGACAT 112012 ||| || |||| || || | ||| | |||| | | || | || || |||| Sbjct 3608286 TCCAAGCTGACATTATGATTCGTCTATCATCAGGATTGTTCTTGATTTTGTTAATTACAT 3608345 Query 112013 TCAAGAGCTGGTCTATCCCTTTACCAGTATAATCCGCCTG 112052 |||||||| || | |||| ||||||||||| || || Sbjct 3608346 CTAAGAGCTGATCAAATCCTTGGCCAGTATAATCAGCATG 3608385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391906496812318